Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01401 ATGTCAATGGACATGATGGGAACTGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACAATTCTTGCGGTTAATGTTCCATACAGCAGTATGCTAACCATAGTGACAGTTAGATGTGGACATTGTGCTAATTTGCTATCAGTTAACATGGTGGCAGCATCACTTCAACCATTTTCTCCTCCTCAACTGCCTCAGCCACAGAAACAGCACATAATCCTTGAAGAACCAAGCAGCAAAGAAATGGGTTCATCTTCAAAATGCAACAAAATAGCATCATTCGAGGCAGTAGTTGAGCATGAACAACCTAGGATTCCTCCCATTCGTCCTATAGAGAAAAGACATCGTGTTCCTTCTGCTTATAACCGATTCATTAAGGAGGAAATTCAAAGGATTAAGGCTAGTAATCCAGATATCAGCCACAGGGCGGCTTTCAGTTCAGCAGCAAAAAATTGGGCACATTTCCCTCATATTCACTTTGGGAAGCAACAAGCAAAATTGGACAATGCTGAAGGAACTCATGAAAAGACTAATGGATTCTACTGA 546 0.4121 MSMDMMGTERVCYVHCNFCNTILAVNVPYSSMLTIVTVRCGHCANLLSVNMVAASLQPFSPPQLPQPQKQHIILEEPSSKEMGSSSKCNKIASFEAVVEHEQPRIPPIRPIEKRHRVPSAYNRFIKEEIQRIKASNPDISHRAAFSSAAKNWAHFPHIHFGKQQAKLDNAEGTHEKTNGFY 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01401 181 CDD HMG-box_SF 116 152 - -
Trre8g01401 181 Pfam YABBY protein 8 161 IPR006780 GO:0007275
Trre8g01401 181 Gene3D High mobility group box domain 112 176 IPR036910 -
Trre8g01401 181 PANTHER PROTEIN YABBY 6-RELATED 3 166 IPR006780 GO:0007275
Trre8g01401 181 SUPERFAMILY HMG-box 107 156 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01401 Trre-Chr8 10536945 10543591 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01401 1 181 C2C2-YABBY Transcription Factor Family AT1G08465 57.143 7.50e-69 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Trre8g01401 YABBY 1.5e-67 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01401 K25796 - gmx:100500091 265.774