Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01393 ATGAGTGATATAAGGAAGTGGTTCTCAAAATCACATGAAAAAACCAACAATGCCGCTGGTAACTCCAACAAACCCTCCGATCAACCTAAACCTTCTCCGGCTAAACCTGACCCGGAGAAAACGGTGCCTGAAGGTCAAACAAGTTCGGGCAGAAGGAAAACTAGCAAATATTTTAATACGGATAAACCAAAGGCAAAAGAAGAGGTAGAAACGCAGGCGCTCTCTGCTAAAAGAAAGACTATGAAGGACAGTAATGAAGATGATGAAGATGACACTGTTCGGCCCACTAATCAAAAGAAGTTAGCTGGTTCAACTCCTACAAAAAAATTGAAGAGTGGGTCGGGTAGGGGAATCCTTCAGAAACCTGTAGATTTGGATGAAAGTGATGAAGACGATCAGAAAGATGCCGTGTCTTCTATTAAATCTGGTGGAAGGGGTCGTGGTGGAAGAGGAGCATCAACACAAGCAACTGGTGGGAGAGGCCGAGGGGGTGGTAGGGGGACCACTCAGAAATCTGCAGATTTGGAAGAAATTGACGAAGATGACGACAAAAATGCTGTGTCTACTGCTAAATCTGGTGGAAGGGGTCGTGGTGGAAGAGGAGCTTCAACACAAGCATCTGGTGGAAGGGGCCGAGGGGGTGGTAGGGGTGGATTCATGAATTTTGGTGAAAGAAAAGATCCTCCACACAAGGGAGAAAAGGAAGTCCCTGAAGGTGCTCCTAACTGTTTAGATGGTTTAACTTTTGTAATCAGTGGAACACTGGACAGTTTGGAACGAGAAGAAGCTGAAGATTTGATTAAACGCCATGGTGGCCGTGTCACTGGATCAGTCAGCAAGAAAACAAATTTTTTGTTATGTGACGAGGATATTGGGGGAAGGAAGTCTGAAAAAGCAAAAGAGCTAGGAACTAAGTTCCTCACAGAGGATGGATTGTTTGATATGATTCGGGCATCAAAACCTGCAAAAACTCCCAAGCAAGAGGAATGCAAAAAACCTGTGAATAAGGCTGTTGCAGTGCCACTGCCATCCCCGTCAAAAGTTCCTCTGAAGGTAGAAACAAAAGCCCCTTTGTCTTCATGCTCACTTTCCAACCAAGCCAAGCCTAAGACAGCTACTACCATTCAGTCTAATTTGACGTGGACAGAAAAACATCGACCTACAAACCCAAAGGATATCATAGGGAATCAGTCACTTGTTTCACAGCTTCGAAATTGGTTGAAAGGTTGGCATGAGCAATTTTCTAACACTGGTGGCAATGAAAAAGGAAAAAAGCAGAATGACCCTAATTCCAAAAAGGCTGTTTTGTTAAGTGGAACCCCTGGTATAGGCAAAACAACTTCAGCAAAGCTGGTGTGTCAGGAGCTTGGTTTCCAAGCCATAGAGGTAAATGCTAGTGATAGCCGTGGAAAAGCGGATAGCAAAATTGAAAAAGGAATTAGTGGAAGCAATGCAAATTCTATCAAGGAACTTGTGAATAATAAGGCCTTTGGTCGTGATAAGGATTGGTCAAAGCTGTCCAAAACTGTTCTTATTATGGATGAGGTTGATGGGATGTCAGCTGGTGATAGGGGTGGTGTTGCTGATCTTATTGCTAGCATCAAGATATCAAAAATTCCTATCATCTGCATTTGTAATGACCGTTATAGCCAGAAACTAAAAAGCCTAGTTAACTACTGTTTACTTCTTAGTTACCGGAAACCTACAAAGCAACAGATGGCAAAGAAGTTTATGGAGGTTGCAAAGGCTGAAGGGCTTCAAGTTAATGAGATTGCTCTTGAGGAATTAGCAGAAAGAGTTAATGGAGATATGCGTATGGCACTAAACCAGTTACAATATATGAGCCTCTCCATGTCAGTGATCAACTACGATGATATCAGGCAGCGCTTACTCACGAATGCGAAAGATGAAGACATTTCACCATTTACGGCTGTTGATAAGCTTTTTGGTTTTAACGCTGGAAAGATGAAAATGGATGAGAGGATTAATCTTAGCATGAGTGATCCTGATCTTGTTCCTCTTATAATCCAGGAAAATTATATTAATTATAGACCAAGCTCTGCTAGTAAGGATGACAATGGTATAAAACGCATGAACTTGATTGCCCGTGCTGCTGAGTCTATTGCCAGTGGGGATATAGTGAACGTGCAGATTCGCAGATATCGACAATGGCAGCTCTCTCAAACTAGTTCTGTTGCATCATGTATACTTCCTGCTTCGTTGTTACATGGGCAAAGGGAAACACTTGAACCGGGAGAACGTAATTTTAATCGATTTGGGGGGTGGCTGGGAAAGAATTCGACAACGGGTAAAAACATGAGGCTTATGGACGACCTGCATGTTCACATTCTTGCATCTCGCGAATCTAGTTCGGGAAGGGATACTATTCGTTTGGAATACCTTTCTCTTATGCTTAAAAAATTGACAGAACCTCTCCGAGTCCTACCTAAGGCTGAAGCTGTTGAGAAAGTTGTGGAATTTATGAATACATATTCAATCAGTCAGGAAGATTTTGATACTATAGTAGAATTATCAAAATTCAAGGGTCATGCCAATCCGCTAGATGGCATACAGCCTGCCGTTAAGTCAGCCTTGACAAAAGCATACAAAGAGCTGAGCAAAACTCGGACGGTTCGAGCTGCGGATCTAATTACTCTTCCTGGAATTAAAAAGGCACCTAAGAAGCGAATTGCTGCTATTTTAGAACCAGCTGATGAAGGTGTGGAACAAGGTGATGGTGGCAACACTTTGGACGAGAGTGAAGAAGAGAACACCTCTGACATAGATGAGTCAGGTGCCGCAACTGGCGAGAAGCTGAAGTCAGAACTTCAAAGCTTGAATTCAAAGGGCATGCAAGTACAATTGGAATTGAAGGGAACGGGAAGTTCCAAGAAGACATCCGGTGGTAGAGGTAAAGGTGCTTCTGCATCTGCGCAGAAGGTTGCTCAAACAAAGACTCCTGCAAAAAGAAAAAGGTGA 2979 0.4297 MSDIRKWFSKSHEKTNNAAGNSNKPSDQPKPSPAKPDPEKTVPEGQTSSGRRKTSKYFNTDKPKAKEEVETQALSAKRKTMKDSNEDDEDDTVRPTNQKKLAGSTPTKKLKSGSGRGILQKPVDLDESDEDDQKDAVSSIKSGGRGRGGRGASTQATGGRGRGGGRGTTQKSADLEEIDEDDDKNAVSTAKSGGRGRGGRGASTQASGGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPNCLDGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNFLLCDEDIGGRKSEKAKELGTKFLTEDGLFDMIRASKPAKTPKQEECKKPVNKAVAVPLPSPSKVPLKVETKAPLSSCSLSNQAKPKTATTIQSNLTWTEKHRPTNPKDIIGNQSLVSQLRNWLKGWHEQFSNTGGNEKGKKQNDPNSKKAVLLSGTPGIGKTTSAKLVCQELGFQAIEVNASDSRGKADSKIEKGISGSNANSIKELVNNKAFGRDKDWSKLSKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSYRKPTKQQMAKKFMEVAKAEGLQVNEIALEELAERVNGDMRMALNQLQYMSLSMSVINYDDIRQRLLTNAKDEDISPFTAVDKLFGFNAGKMKMDERINLSMSDPDLVPLIIQENYINYRPSSASKDDNGIKRMNLIARAAESIASGDIVNVQIRRYRQWQLSQTSSVASCILPASLLHGQRETLEPGERNFNRFGGWLGKNSTTGKNMRLMDDLHVHILASRESSSGRDTIRLEYLSLMLKKLTEPLRVLPKAEAVEKVVEFMNTYSISQEDFDTIVELSKFKGHANPLDGIQPAVKSALTKAYKELSKTRTVRAADLITLPGIKKAPKKRIAAILEPADEGVEQGDGGNTLDESEEENTSDIDESGAATGEKLKSELQSLNSKGMQVQLELKGTGSSKKTSGGRGKGASASAQKVAQTKTPAKRKR 992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01393 992 SMART BRCT_7 241 319 IPR001357 -
Trre8g01393 992 SMART AAA_5 431 569 IPR003593 GO:0016887
Trre8g01393 992 MobiDBLite consensus disorder prediction 97 111 - -
Trre8g01393 992 Pfam ATPase family associated with various cellular activities (AAA) 435 534 IPR003959 GO:0005524|GO:0016887
Trre8g01393 992 FunFam Replication factor C subunit 1 215 318 - -
Trre8g01393 992 Gene3D BRCT domain 216 318 IPR036420 -
Trre8g01393 992 Gene3D - 379 567 IPR027417 -
Trre8g01393 992 ProSiteProfiles BRCT domain profile. 239 320 IPR001357 -
Trre8g01393 992 MobiDBLite consensus disorder prediction 901 992 - -
Trre8g01393 992 Gene3D - 568 638 - -
Trre8g01393 992 FunFam Replication factor C subunit 1 640 749 - -
Trre8g01393 992 MobiDBLite consensus disorder prediction 13 28 - -
Trre8g01393 992 MobiDBLite consensus disorder prediction 55 96 - -
Trre8g01393 992 CDD BRCT_RFC1 239 317 - -
Trre8g01393 992 SUPERFAMILY post-AAA+ oligomerization domain-like 639 784 IPR008921 GO:0003677|GO:0006260
Trre8g01393 992 SUPERFAMILY BRCT domain 239 320 IPR036420 -
Trre8g01393 992 Pfam Replication factor RFC1 C terminal domain 708 870 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Trre8g01393 992 Gene3D - 640 749 - -
Trre8g01393 992 FunFam Replication factor C subunit 1 568 639 - -
Trre8g01393 992 MobiDBLite consensus disorder prediction 938 984 - -
Trre8g01393 992 CDD HLD_clamp_RFC 568 626 - -
Trre8g01393 992 PIRSF RFC1 1 970 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Trre8g01393 992 FunFam Replication factor C subunit 1 379 567 - -
Trre8g01393 992 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 14 973 - -
Trre8g01393 992 MobiDBLite consensus disorder prediction 223 238 - -
Trre8g01393 992 CDD AAA 430 531 - -
Trre8g01393 992 MobiDBLite consensus disorder prediction 412 431 - -
Trre8g01393 992 MobiDBLite consensus disorder prediction 1 243 - -
Trre8g01393 992 Pfam BRCA1 C Terminus (BRCT) domain 241 316 IPR001357 -
Trre8g01393 992 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 379 628 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01393 Trre-Chr8 10485076 10494617 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01393 1 950 Core DNA Replication Machinery Family AT5G22010 63.732 0.0 1047
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01393 K10754 - gmx:100790070 1375.15