Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01387 ATGTTTAACGGTATGATGGATCCTGATTTGATCAGAATCGCTCAAGAACAGATGAGTCGCATGTCACCCGCTGATATGGCTCGGATCCAACAACAGATGATGTCTAATCCCGAGTTGATGAGGATGGCTTCAGAAAGCATGAAGAATATGAATCCTGAAGATTTTAAACTTGCTGCTGAACAGTTAAAGCATACACGGCCTGAAGAAATGGCTGAGATTGGTCAAAAGATGGCTAATGCATCACCTGATGAAGTTGCGGCTATGCGTACTCATGCTGAAGCTCAGATGAAATATCAATTGAATGCAGCTGAGATGTTGAAGAAGCAGGGAAATGAACTTCACAATCAAGGAAAGTTTGATGATGCTTTGCAGAAGTATAAGCTGGCTAAGGAAAACATTAAAGAGATTCCATCTTTTCAAAGTAGAAAGCTTCTTTTGGCGTGTTCACTTAACTTGATGTCCTGTTACTTGAAGACAAGGCAGTATGATGAGTGCATAAAAGAAGGTTCTGAGGTTTTGGTATATGATTCAAAGAACCTTAAGGCTCTTTATCGAAGAGGTCAAGCATATAAGGAACTAGGCCGTCTGCAGGATGCTGTTACTGATTTGAGCAACGCACTTGAAGTGTCTCCTGATGATGATACAATTGAGGAGCTTTTGCGGGACACCAAGGAACAGTTGACAAAGGAAGGTGGTGATTTTGCACCTGGAAAATTAGTAATTGAAGAAATAACTGAAGAAGTCGAGAATGTGCCTTCTGGAAATAACAAAAGCTCTTCTTTTGAACAAACAGTTGATCAAGCGCAAAAATCTGGTGGTTCCTCCAAGAGTAGCAGTATAGCTAACAACGGAAATCCAAAATCAAAACCAGATAGTTTAGATACACTGAGAAAAGATCCAGAAGCCATCAGATCATTTCAAAACATCATTTCAAATGCCGACCCTGCCACCCTGGCTGCTTTGAACATTGGACAATCCAAAGACGTGTCTCCAGATATGATTAAAGCATCCACGGAAATGATCGGAAAGATGTCACCAGAGGAACTTCAAAAAATGCTTGACATGGCGTCTTCATTTCAAGGGGACAACCCATTTTTAAGAGGAGGTTCCTCTAGTTCTCCATTCAACCCTGGATCGATGCCTCCAAACATGACACCTGATATGTTTAAAACAGCAAGTGACATGATAAGTAAAATGCCACCAGATGACCTTAAGAAGATGTTTGAAATGGCATCCGTACTGCAAGGGAAAGAATCTATTCCATCATCAGCAGCTGTAGACAAGAATGAAAGAAATGTTTCACAGTCAAATTTCCCATCCTCAAGCACCACTCGTGATTTTGGAGAATCAAGTTCTTCTCACAATGTGTTTTCAGATAATAGAAATGCTTCCGAGCCAAACTTCCCATCCTCAAGCACTGATTTACAAGAACAGATGAGAAACCAGATGAAAGATCCAGCTATGCGGCAGATGTTCACATCAATGTTTAAAAATATGAGCCCAGAAATGATGGCAAACATGGGAGAACAATTTGGTTTCAAGCTTTCACCAGAAGACGCAGCAAAAGCTCAGCAAGCTATGTCATCCTTATCACCAGAGAACTTGGATAAAATGATGCTTTGGGCGGACAGGATTCAAAGAGGAGCTGAATGTGCGAAAAAGACAAAGAACTGGTTGCTAGGGAAACAAGGCTTTATCTTAGCAATATGCATGCTCATTTTGGCCGTCATTCTTCACCGGTTAGGTTTCATTGGTAGCTAG 1761 0.4106 MFNGMMDPDLIRIAQEQMSRMSPADMARIQQQMMSNPELMRMASESMKNMNPEDFKLAAEQLKHTRPEEMAEIGQKMANASPDEVAAMRTHAEAQMKYQLNAAEMLKKQGNELHNQGKFDDALQKYKLAKENIKEIPSFQSRKLLLACSLNLMSCYLKTRQYDECIKEGSEVLVYDSKNLKALYRRGQAYKELGRLQDAVTDLSNALEVSPDDDTIEELLRDTKEQLTKEGGDFAPGKLVIEEITEEVENVPSGNNKSSSFEQTVDQAQKSGGSSKSSSIANNGNPKSKPDSLDTLRKDPEAIRSFQNIISNADPATLAALNIGQSKDVSPDMIKASTEMIGKMSPEELQKMLDMASSFQGDNPFLRGGSSSSPFNPGSMPPNMTPDMFKTASDMISKMPPDDLKKMFEMASVLQGKESIPSSAAVDKNERNVSQSNFPSSSTTRDFGESSSSHNVFSDNRNASEPNFPSSSTDLQEQMRNQMKDPAMRQMFTSMFKNMSPEMMANMGEQFGFKLSPEDAAKAQQAMSSLSPENLDKMMLWADRIQRGAECAKKTKNWLLGKQGFILAICMLILAVILHRLGFIGS 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01387 586 Gene3D Tetratricopeptide repeat domain 89 232 IPR011990 GO:0005515
Trre8g01387 586 ProSiteProfiles TPR repeat profile. 180 213 IPR019734 GO:0005515
Trre8g01387 586 SUPERFAMILY TPR-like 96 226 IPR011990 GO:0005515
Trre8g01387 586 MobiDBLite consensus disorder prediction 425 477 - -
Trre8g01387 586 MobiDBLite consensus disorder prediction 421 477 - -
Trre8g01387 586 SMART tpr_5 146 179 IPR019734 GO:0005515
Trre8g01387 586 SMART tpr_5 103 136 IPR019734 GO:0005515
Trre8g01387 586 SMART tpr_5 180 213 IPR019734 GO:0005515
Trre8g01387 586 MobiDBLite consensus disorder prediction 249 295 - -
Trre8g01387 586 ProSiteProfiles TPR repeat region circular profile. 180 213 - -
Trre8g01387 586 PANTHER TPR_REGION DOMAIN-CONTAINING PROTEIN 4 373 - -
Trre8g01387 586 Pfam Tetratricopeptide repeat 181 213 IPR001440 GO:0005515
Trre8g01387 586 MobiDBLite consensus disorder prediction 249 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01387 Trre-Chr8 10445468 10450877 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01387 99 227 Calmodulin-binding Proteins AT5G48570 34.815 3.55e-16 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01387 - - gmx:100793234 899.427