Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01378 ATGGCTAGAGAGAGTGAACTTACCATGGATTCAGATCCAATTGATCTTAACTCTTTCAATGAAGACATAAACAATCCCATGTTGACACATAGTCCCAATCAAAACAATGTTGTTGCTACACCTAGTAGCTTTCCATTCCAATTAGTCAACCTTAACTTCTCCAATAGAAACCAAACCTCTCATGAAACATTGAAAGAGATTGATTTCTTTAAGGTTAACAACATTGATCGTAATAAGGGAAAAGAGATTGCATTTTCCCTTGACAATGATCATATTGATACCAATTTATTGGAATTCAAACTCAACACTGCCACTGGTCTCAATCTTCTTACCCCCAATACTAGCAGTGATCAATCTATGGTGAATGATGATGGCATGTCACCTACTTCTGACGACAAGAGAATTAATAATCAGATGGCTATTCTTCAAGGTGAGCTTGATCGAACAAACATGGAGAATCGTCGATTAAAGTTGATGCTAGGTCAACTTCATGCAAATTACAAAAACCTGCGTATGCATTTCGATAAAGTGATGCACGATCGTATGGTTGAGAGAAAGTCTAAAGAGAAAGAGAGAATTGAGAATGGTGGAGTATTAGATCCAAGTAAATTTATTGATCTTGAGTTGGCTCCTAATGTTGAGACTGAAATGGATCTTGATCCCTCCTCTTCATCAATGGGAAGAAAAAGAAGTCGCGATGAATTAAGATCGCCGACAAATAACACCGATGTTGCTTCCAATGAATTAGTCCTACAAAAGAACAAGAGTATTGTTAGTGATGGAAAGAAGGAACTTGGTAAAGGGATTGAAAAAGATGATAGTCCCATAGATAATGCTGAGAAAACTCAAAGTTTGAGTCTTCCAAACAATTTAACTGTTCTTGAAACTGATGATGGTGCATCGGGGAAAGCAAGAGTTTCTGTTAGAACTCTATCACAAGTAGACATGGTCCCAGATGGGGGCCAATGGAGAAAGTATGGTCAAAAAATGACTAAAGGAAACCCGCCGTGTCCTCGATCTTATTATCGTTGCAGCTTTTCTTTTGAGTGCCCGGTTAGAAAACAGATACAAAGGTGA 1077 0.3807 MARESELTMDSDPIDLNSFNEDINNPMLTHSPNQNNVVATPSSFPFQLVNLNFSNRNQTSHETLKEIDFFKVNNIDRNKGKEIAFSLDNDHIDTNLLEFKLNTATGLNLLTPNTSSDQSMVNDDGMSPTSDDKRINNQMAILQGELDRTNMENRRLKLMLGQLHANYKNLRMHFDKVMHDRMVERKSKEKERIENGGVLDPSKFIDLELAPNVETEMDLDPSSSSMGRKRSRDELRSPTNNTDVASNELVLQKNKSIVSDGKKELGKGIEKDDSPIDNAEKTQSLSLPNNLTVLETDDGASGKARVSVRTLSQVDMVPDGGQWRKYGQKMTKGNPPCPRSYYRCSFSFECPVRKQIQR 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01378 358 Gene3D WRKY domain 304 358 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre8g01378 358 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 107 358 IPR044810 GO:0003700
Trre8g01378 358 MobiDBLite consensus disorder prediction 114 133 - -
Trre8g01378 358 MobiDBLite consensus disorder prediction 262 278 - -
Trre8g01378 358 ProSiteProfiles WRKY domain profile. 312 358 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre8g01378 358 MobiDBLite consensus disorder prediction 212 244 - -
Trre8g01378 358 MobiDBLite consensus disorder prediction 262 281 - -
Trre8g01378 358 SUPERFAMILY WRKY DNA-binding domain 309 358 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre8g01378 358 Pfam WRKY DNA -binding domain 319 358 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre8g01378 358 MobiDBLite consensus disorder prediction 223 237 - -
Trre8g01378 358 SMART WRKY_cls 317 358 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01378 Trre-Chr8 10367379 10370111 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01378 62 358 WRKY Transcription Factor Family AT1G62300 35.390 1.84e-42 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre8g01378 WRKY 1.3e-14 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01378 - - tpra:123922147 456.447