Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01376 ATGGAGTGGAACAGAGGCCACATCATAGGTCATGGCTCAACCGCCACCGTCTCCCTTGCCACGCTTAGCGGCGACATCTGTGCTGTGAAGTCATCGGAGCTTTCGTGTTCAGAGCCTCTAAAGAGGGAGAAAAATATTCTATCTTCTCTATGCTATCCCAATCCTTATGTGGTTAATTATAAAGGTTATGACATTACCATGGAGAATAACAAGCTCATGTACAATCTATTCTTGGAATACATGCCATTCGGCACGCTTAGTCAACACGGTGGACTGCTCAATGAGCAGACCATCATGTGCTATACAAGGCAAGTATTAAAAGGGTTAAATTATTTGCATTCAAAAGGATTAGTGCATTGCGACATTAAAGGCGCGAACATCTTGATTGGAGAAGATGGGGCCAAAATTGGAGACCTTGGATGTGCTAAGAGTGTAAATGAGGTCCCGACTCCAATCCGCGGCACCCCAGTTTTTATGGCACCCGAGGTAGCACGCGGTGAAGAACAAGGATGTCCTAGTGATATTTGGTCACTTGGTTGCACTATAATTGAAATGGCAACTGGTTCTTCACCATGGCCTAATGTAGATGACCCTATTTCAACACTTTATCATATAGCATATTCCAACTATGGTCCTAAAATTCCATGTTTTTTATCTCATCAAGCAAAGGACTTTATAGAAAAATGTTTAAGAAGGAATCCAAAAGAGAGGTATTCAGCTAGTCAACTTTTGAGTCATCCATTTCTTGAAGAGTTATGTTCCAATTCTAAGCAAGTTGTGGAATCTAATTCAATTTCACCAACTAGTATTCTTGAACAAGGCATTTGGTGTTCTATGGAAGAATCACAAAGCCTTAGGTTAGAGAATTCTATTGTTGATGATAGGATCAGAAGATTAGCAGCAGGGGAACCTTGTTTAACAAGGTGGCATGATAATCATGATGAGAATTGGATCACAATTAGAGAGAATGAAGTTGATGTTTCTTGTAATTGTGGGTTAGAGATAGGTTCAACTGATGATGAGTTGGTAAAAAGTAATGTGAAAGATGGGATTAGTGGGAATTTTTGTAAGGGTCAAATTCACATTTGTAGGGATGGTAGTTTTGTAGGTAGTAGTGATAATAATTTTCAGCTAGGTATTGTTAAGATGATAGTTCCATCAATATTAGATGTTTTATAA 1179 0.3919 MEWNRGHIIGHGSTATVSLATLSGDICAVKSSELSCSEPLKREKNILSSLCYPNPYVVNYKGYDITMENNKLMYNLFLEYMPFGTLSQHGGLLNEQTIMCYTRQVLKGLNYLHSKGLVHCDIKGANILIGEDGAKIGDLGCAKSVNEVPTPIRGTPVFMAPEVARGEEQGCPSDIWSLGCTIIEMATGSSPWPNVDDPISTLYHIAYSNYGPKIPCFLSHQAKDFIEKCLRRNPKERYSASQLLSHPFLEELCSNSKQVVESNSISPTSILEQGIWCSMEESQSLRLENSIVDDRIRRLAAGEPCLTRWHDNHDENWITIRENEVDVSCNCGLEIGSTDDELVKSNVKDGISGNFCKGQIHICRDGSFVGSSDNNFQLGIVKMIVPSILDVL 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01376 392 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 323 - -
Trre8g01376 392 ProSiteProfiles Protein kinase domain profile. 3 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g01376 392 SMART serkin_6 3 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g01376 392 CDD STKc_MAPKKK 2 249 - -
Trre8g01376 392 SUPERFAMILY Protein kinase-like (PK-like) 3 263 IPR011009 -
Trre8g01376 392 Pfam Protein kinase domain 5 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g01376 392 ProSitePatterns Serine/Threonine protein kinases active-site signature. 117 129 IPR008271 GO:0004672|GO:0006468
Trre8g01376 392 Gene3D Transferase(Phosphotransferase) domain 1 2 316 - -
Trre8g01376 392 ProSitePatterns Protein kinases ATP-binding region signature. 9 30 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01376 Trre-Chr8 10354386 10355564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01376 3 321 MAP Kinase Kinase Kinase AT5G55090 48.703 3.08e-101 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Trre8g01376 Pkinase 3.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01376 K20716 - gmx:100794648 442.965