Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01366 ATGGAACTTCGTTCTCGTCGACGCGTGTCCGATGAAAACGATTCCGCGGATAGGAAGGGGAAGAAGCCGATGATTAATGATACTAATGGAAAGATTGACATTGATACCGATGAAGATGATCATGCTGTGTCTTTGAAATCTGATTCTGATTATGAAGCTGAAGACTTGGGTGGGAACTTCCCATTTGACTTGAATCAAGACCCAACTTTAAGCGTTAGTGATTTTGATGGAGAAGATAATGATTCTGAATTTTCTGATGGTAGTGAGTCTTTGTCTAAACGGATAATGGCACAGTCCAGAAAGAGAGGAAGAAAATCCAAGATCGAAATCGGAGATATTAGTGATTTAGATGCTTTAGTTAGAGTGTTCGAGGAGAATGAGTTGCATTCAATGCGTTTTGAAGAAGCTCCAGTTGTTTTACCTAACGTGATAAAGAAGACAAAAGCTAAGAAAACAAAAAAGGGAGATCCTAAGCCAGTGTTGTTATGGCATGCTTGGAAAGAAGAACATGAGAGATGGATTGATCAGAATTTGTTGGAAGACGTTACCTTGGATCAAAGTGAAGTGATGAATGAGACGGCTGAGGCATCGTCAGATCTGATTGTTCCTTTGTTGAGGTACCAAAGGGAATGGTTAGCCTGGGCTTTGAAGCAGGAAAGTTCTGTAACTAGAGGAGGAATCCTTGCTGATGAAATGGGCATGGGGAAAACTATTCAAGCAATTGCCCTTGTCCTTGCTAAGCGTGAATTACAACAAATGAGTTGTGAATCAGATGAACAATCACATTCGCCAGGGTCATCTAAAGTCCTTCCTGTGATCAAAGGAACACTTGTCATTTGTCCTCTGGTTGCTGTTAATCAGTGGGCTAGTGAGATTGATCGATTTACTTTGAAAGGAAGCACCAAAGTTCTGATTTATCATGGGCCGAAGAGAGAGAATTTTGCTGAACAGTTCTCGGAGTATGATTTTGTAATAACAACATATTCTATTGTTGAATCAGAGTACAGAAAGCATGTGATGCCTCCTAAGGAGAAGTGCCCATATTGTGGAAAATTGTATAACCCGAGTAAGTTAGATATTCACCTGAAGTACCATTGTGGGCCCAATGCTATTAAAACAAGCAAACAATCAAAGCAAAGCAAGAAAAATAAAAGTGGTCAGAGTTCAAAGATGGATGGAGAGTTGAAACATAACTCTATCAAGAAGAAGAAAGAGGAAATGTGCCTCGGAGTAGAAGGCAATGAGAAGTCATTTTTGCATGCTGTAAAGTGGCAGAGGATCATATTGGATGAGGCACACTCTATAAAATCTAGGCATTGTAACACTACTAAAGCAGTTCTTGCTTTAGAGTCTTCTTACAAATGGGCATTAAGTGGTACACCCCTTCAGAATCGTGTTGGAGAGCTATATTCTTTGGTACGATTTCTGCAGATAGTTCCTTTTTCCTATAACCTGTGCAAGGACTGTGATTGCAGGATACTTGATCATAGCTCCTCTAAAGAATGTCCAAACTGCCCCCACAGTTCAGTTAGGCATTTTTGCTGGTGGAACAAAAATATCGCGACACCAATTCAAACACACGGATATGGCAATAGTGGTAAAAGAGCTATGATATTGCTCAAAAACAAAATTTTGAAGAGCATAGTTTTAAGGCGAACTAAAATAGGCAGGGCTGCTGATCTTGCACTTCCTCCTAGGATCGTTTCACTGAGGAGGGATAGTCTGGATATAAAAGAGCAAGACTATTACGAATCACTATACAATGAAAGTCAGGCACAGTTTAATACGTATGTCGAAGCAAATACTCTGACAAATAATTATGCTCATATTTTTGACCTCCTCACACGACTACGTCAGGCTGTGGATCATCCATATCTTGTGGTGTATTCTCCAACTGCCACAGCACTAAAGGGTGAAAACTTGGGTAGTAATGGTGAAAAAGAATGTGGCCTTTGTCACGATACTGTTGAAGATCCTGTGGTTACCTCTTGTCAGCATACTTTTTGCAAGGGATGCTTGATAGATTTCTCTGCTTCTTTGGGACGCGTATCGTGCCCCTCATGCTCTACACTACTTACTGTTGATTTAACTTCCAACAAAGATGCTGCGGTTAATAAAACAACCATCAAGGGTTTCAGATCTTCAAGCATTTTAAACAGAATTCAAATCGAGAATTTTCAGACTAGTACTAAAATAGAGGCATTGAGAGAAGAAATTAGATTTATGGTTGAAAGGGATGGTTCAGCAAAAGCAATTGTTTTTAGCCAGTTCACATCATTCTTGGATCTCATAAACTACTCCTTGCAAAAGTCAGGTGTATCTTGCGTTCAATTGAATGGAAGCATGACAATGGGTGCTCGGGATGTTGCCATTAAGAAATTTACTGATGACCCAGACTGCAAAATTTTTCTCATAAGCTTGAAAGCCGGAGGTGTTGCTCTTAATTTGACCGTCGCATCTCATGTTTTCCTCATGGATCCTTGGTGGAACCCTGCAGTGGAGCGTCAGGCTCAGGACAGAATTCACCGGATAGGGCAATACAAACCAATCAGAATTGTGAGATTTGTCATCGAAAACACAATTGAGGAGAGGATCTTGAAACTACAAGAGAAGAAGGAACTAGTATTTGAAGGGACTATAGGCGGCAAATCCGAGTCTCTAGGGAAGTTGACAGTGGCCGACTTAAGATTTCTCTTTGCTAACTAA 2706 0.4043 MELRSRRRVSDENDSADRKGKKPMINDTNGKIDIDTDEDDHAVSLKSDSDYEAEDLGGNFPFDLNQDPTLSVSDFDGEDNDSEFSDGSESLSKRIMAQSRKRGRKSKIEIGDISDLDALVRVFEENELHSMRFEEAPVVLPNVIKKTKAKKTKKGDPKPVLLWHAWKEEHERWIDQNLLEDVTLDQSEVMNETAEASSDLIVPLLRYQREWLAWALKQESSVTRGGILADEMGMGKTIQAIALVLAKRELQQMSCESDEQSHSPGSSKVLPVIKGTLVICPLVAVNQWASEIDRFTLKGSTKVLIYHGPKRENFAEQFSEYDFVITTYSIVESEYRKHVMPPKEKCPYCGKLYNPSKLDIHLKYHCGPNAIKTSKQSKQSKKNKSGQSSKMDGELKHNSIKKKKEEMCLGVEGNEKSFLHAVKWQRIILDEAHSIKSRHCNTTKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQIVPFSYNLCKDCDCRILDHSSSKECPNCPHSSVRHFCWWNKNIATPIQTHGYGNSGKRAMILLKNKILKSIVLRRTKIGRAADLALPPRIVSLRRDSLDIKEQDYYESLYNESQAQFNTYVEANTLTNNYAHIFDLLTRLRQAVDHPYLVVYSPTATALKGENLGSNGEKECGLCHDTVEDPVVTSCQHTFCKGCLIDFSASLGRVSCPSCSTLLTVDLTSNKDAAVNKTTIKGFRSSSILNRIQIENFQTSTKIEALREEIRFMVERDGSAKAIVFSQFTSFLDLINYSLQKSGVSCVQLNGSMTMGARDVAIKKFTDDPDCKIFLISLKAGGVALNLTVASHVFLMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELVFEGTIGGKSESLGKLTVADLRFLFAN 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01366 901 SMART ring_2 649 688 IPR001841 -
Trre8g01366 901 Gene3D - 357 567 IPR038718 -
Trre8g01366 901 SMART helicmild6 762 845 IPR001650 -
Trre8g01366 901 Pfam Zinc finger, C3HC4 type (RING finger) 648 688 - -
Trre8g01366 901 MobiDBLite consensus disorder prediction 1 91 - -
Trre8g01366 901 ProSiteProfiles Zinc finger RING-type profile. 649 689 IPR001841 -
Trre8g01366 901 MobiDBLite consensus disorder prediction 373 397 - -
Trre8g01366 901 SUPERFAMILY RING/U-box 644 693 - -
Trre8g01366 901 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 55 900 - -
Trre8g01366 901 CDD SF2_C_SNF 729 856 - -
Trre8g01366 901 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 217 479 IPR014001 -
Trre8g01366 901 SMART ultradead3 200 497 IPR014001 -
Trre8g01366 901 MobiDBLite consensus disorder prediction 1 53 - -
Trre8g01366 901 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 563 900 IPR027417 -
Trre8g01366 901 CDD DEXDc_SHPRH-like 204 552 - -
Trre8g01366 901 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 645 715 IPR013083 -
Trre8g01366 901 Pfam Helicase conserved C-terminal domain 731 845 IPR001650 -
Trre8g01366 901 ProSitePatterns Zinc finger RING-type signature. 664 673 IPR017907 -
Trre8g01366 901 Pfam SNF2-related domain 219 627 IPR000330 GO:0005524|GO:0140658
Trre8g01366 901 Gene3D - 206 346 IPR038718 -
Trre8g01366 901 Gene3D - 568 899 IPR027417 -
Trre8g01366 901 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 552 IPR027417 -
Trre8g01366 901 Coils Coil 718 738 - -
Trre8g01366 901 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 727 891 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01366 Trre-Chr8 10277645 10284745 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01366 136 899 RAD5 or RAD16-like Gene Family AT1G05120 66.281 0.0 1053
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre8g01366 SNF2_N 1.6e-49 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01366 K15083 - gmx:100798333 1215.29