Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01341 ATGTTTCAGTCAAACTTGATGGAAGCTGGTCAGTTTCATCCATTAGAGATGATGCAAAACACTTCAGAAAGTGATGTTCCTCGAATCGGTGAAGATGAATGCTTTGAAAGTGCCACAAAATCTTGCAGTGAAAATCATGAAGGTGGTGCTGCTTCTGGTGAAGATCAAGAACCACGTCCCAAAAGAAAACGTTACCACCGCCACACTCAGCATCAGATCCAAGAAATGGAAGCTTTCTTCAAGGAATGTCCACACCCAGATGACAAGCAAAGGAAGGAGCTAAGCAGAGAATTAGGGTTAGAACCATTGCAAGTCAAGTTTTGGTTTCAAAACAAAAGAACTCAAATGAAGACACAACATGAGCGATCGGAGAATTCGCAGCTTAGAGCAGAAAATGAAAAGCTTAGAACAGATAACATGAGGTATAGAGAAGCTCTTAGCAATGCTTCATGTCCTAATTGTGGTGGTCCTACAGCTATAGGTGAAATGTCTTTTGATGAACATCATTCGAGGCTTGAAAATGGAAGGCTAAGAGAAGAGATTGATCGAATTTCAGCAATCGCAGCCAAATACGTAGGAAAGCCGGTGGTAAACTACTCAAACATTTCGCCATCTCTCCCACCTCGTCCAGAAATCGGTTTTGTTGGTAACCAACAAGGAATTGGTGGTATGGAAATGTTTGGAACAAGTGGAGATATTCTAAGGTCCATCAGTGGACCAACTGAAGCAGACAAACCAATAATAATAGAATTAGCTGTTGCAGCTATGGAAGAACTCATTGGAATGGCACAAATGGGTGATCCACTTTGGTTAAATACTACCCTTGATGGAGCTGGTACTGTTCTTAATGAAGATGAATATGTTAGGTCATTTCCTCGTGGAATTGGACCTAAACCTAATGGATTTAAGTGTGAAGCTTCTAGAGAAACTAGTGTTGTTATCATGAATCATGTTAGCCTTGTTGAGATTCTCATGGATGTGAACCAATGGTCAACAGTATTTGCTGGTATTGTTTCAAGAGCTATGACTGTGGAAGTGTTGTCAACTGGGGTGGCAGGAAACTACAATGGTGCTTTACAAGTGATGACAGCAGAGTTTCAAGTTCCATCACCACTTGTGCCAACTAGAGAGAGTTACTTTGTAAGGTATTGCAAACAACATACTGATGGGACATGGGCAGTTGTCGATGTTTCTTTGGATAATTTGCGCCCTAGTCCTTCATCTAGATGTAGAAGAAGGCCTTCTGGTTGCTTAATTCATGAGATGCCAAATGGCTACTCCAAGGTGACATGGGTTGAGCATGTAGAAGTGGATGATAGAGGTGTTCATAATCTATACAAGCAGCTTGTTAGCACTGGACATGCATTTGGTGCAAAACGTTGGGTTGCAACTTTAGATCGACAATGTGAAAGACTTGCTAGCTCCATGGCAACAAACATTCCTACAGTAGATGTTGGTGTGATAACAAACCAAGAAGGGAGGAAGAGTATGATGAAACTAGCAGAGAGAATGGTGATAAGTTTTTGTGGTGGAGTGAGTGCTTCAACAGCACATACATGGACAACATTATCTGGAACAGGAGCTGATGATGTCAGAGTGATGACACGTAAGAGTGTTGATGATCCTGGAAGACCTCCTGGTATTGTTCTTAGTGCTGCTACTTCTTTTTGGCTTCCTGTTCCACCTAAACAAGTCTTTGATTTTCTTCGTGATGAAAACTCAAGAAATGAGTGGGATATTCTTTCCAATGGTGGAGTAGTCCAAGAAATGGCACACATTGCAAATGGACGAGATACTGGAAATTGTGTGTCACTCTTAAGAGTTAATAGTGCAAATTCAAGCCAGAGCAACATGTTAATATTACAAGAGAGTCTAACAGATTCAACAGGTTCATTTGTGATCTATGCACCAGTAGACATTGTTGCTATGAATGTAGTTCTAAATGGAGGAGATCCAGATTATGTAGCACTTCTTCCATCAGGATTTGCTATACTTCCTGATGGAAATGCAATTGGAAATGGTGAAAATGGAGGACAAGCTGGTGGCGGCGGTGGCGGTGGCGGAGGATCACTTTTGACCGTTGCATTTCAAATATTGGTTGATTCTGTTCCAACTGCTAAACTTTCTCTTGGATCTGTTGCTACTGTTAATAGTCTTATTGCTTGTACTGTTGAGAGAATCAAAGCTTCTTTGTCTGGTGAAGGTGCTGCTTGA 2214 0.4133 MFQSNLMEAGQFHPLEMMQNTSESDVPRIGEDECFESATKSCSENHEGGAASGEDQEPRPKRKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERSENSQLRAENEKLRTDNMRYREALSNASCPNCGGPTAIGEMSFDEHHSRLENGRLREEIDRISAIAAKYVGKPVVNYSNISPSLPPRPEIGFVGNQQGIGGMEMFGTSGDILRSISGPTEADKPIIIELAVAAMEELIGMAQMGDPLWLNTTLDGAGTVLNEDEYVRSFPRGIGPKPNGFKCEASRETSVVIMNHVSLVEILMDVNQWSTVFAGIVSRAMTVEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYFVRYCKQHTDGTWAVVDVSLDNLRPSPSSRCRRRPSGCLIHEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGHAFGAKRWVATLDRQCERLASSMATNIPTVDVGVITNQEGRKSMMKLAERMVISFCGGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKQVFDFLRDENSRNEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESLTDSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGNAIGNGENGGQAGGGGGGGGGSLLTVAFQILVDSVPTAKLSLGSVATVNSLIACTVERIKASLSGEGAA 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01341 737 Pfam START domain 251 471 IPR002913 GO:0008289
Trre8g01341 737 CDD homeodomain 61 120 IPR001356 GO:0003677
Trre8g01341 737 ProSiteProfiles 'Homeobox' domain profile. 59 119 IPR001356 GO:0003677
Trre8g01341 737 SUPERFAMILY Homeodomain-like 53 119 IPR009057 -
Trre8g01341 737 SUPERFAMILY Bet v1-like 241 473 - -
Trre8g01341 737 FunFam Homeobox-leucine zipper protein HDG1 48 135 - -
Trre8g01341 737 MobiDBLite consensus disorder prediction 26 40 - -
Trre8g01341 737 CDD START_ArGLABRA2_like 245 470 - -
Trre8g01341 737 ProSiteProfiles START domain profile. 241 474 IPR002913 GO:0008289
Trre8g01341 737 SMART START_1 250 471 IPR002913 GO:0008289
Trre8g01341 737 SUPERFAMILY Bet v1-like 490 728 - -
Trre8g01341 737 ProSitePatterns 'Homeobox' domain signature. 94 117 IPR017970 GO:0000981|GO:0006355
Trre8g01341 737 MobiDBLite consensus disorder prediction 1 70 - -
Trre8g01341 737 Gene3D - 291 468 IPR023393 -
Trre8g01341 737 Coils Coil 118 145 - -
Trre8g01341 737 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 61 731 IPR042160 -
Trre8g01341 737 Gene3D - 49 136 - -
Trre8g01341 737 FunFam Homeobox-leucine zipper protein GLABRA 2 250 470 - -
Trre8g01341 737 Pfam Homeodomain 62 117 IPR001356 GO:0003677
Trre8g01341 737 SMART HOX_1 60 123 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01341 Trre-Chr8 10027303 10032794 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01341 1 736 Homeobox Transcription Factor Family AT1G05230 76.819 0.0 1137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre8g01341 START 4.6e-58 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01341 K09338 - gmx:100782260 1257.28