Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01323 ATGGCTGACACAGAATACTCCTCTAACAATGTTTCAGCAGATTCTCCAGATCAACAATCTAGCCAAGATTCAAAACTTGAGTTTTCTGCGGATGAGGAAATCCTTATTACTATGGTTTATAATCTGGTTGGAGAGAGGTGGTCATTGATTGCTGGAAGAATTCCTGGAAGAACAGCAGAAGAAATTGAAAAGTATTGGAATTCAAGATACTCGACTAGCCAATGA 225 0.3867 MADTEYSSNNVSADSPDQQSSQDSKLEFSADEEILITMVYNLVGERWSLIAGRIPGRTAEEIEKYWNSRYSTSQ 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01323 74 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 28 74 IPR017930 -
Trre8g01323 74 MobiDBLite consensus disorder prediction 1 26 - -
Trre8g01323 74 Pfam Myb-like DNA-binding domain 27 68 IPR001005 -
Trre8g01323 74 SUPERFAMILY Homeodomain-like 27 70 IPR009057 -
Trre8g01323 74 SMART sant 24 72 IPR001005 -
Trre8g01323 74 ProSiteProfiles Myb-like domain profile. 20 70 IPR001005 -
Trre8g01323 74 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 27 71 - -
Trre8g01323 74 CDD SANT 27 67 IPR001005 -
Trre8g01323 74 FunFam MYB-like transcription factor 27 69 - -
Trre8g01323 74 Gene3D - 27 70 - -
Trre8g01323 74 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01323 Trre-Chr8 9816646 9822520 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01323 29 68 MYB Transcription Factor Family AT5G35550 65.000 3.45e-13 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre8g01323 Myb_DNA-binding 2.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01323 - - pop:18106978 108.997