Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01310 ATGTGCAAAGGTACTATAGATGAGAAAAATCATAGTTCATGCAAGAGCTTTCCACCTAAAGAAAATGCTTCAATATGTGAAACAAAATCAAGTTCAAGTTCAATATCTTGTGAGCTTTGTGGATTGAAAGCTTCATTGTATTGTCATTCTGATAATGCATATTTATGTAGAAAATGTGACAATTTAGTTCACAAAGCCAATTTCTTGGCACTAAGACATGTAAGGTGTTTCTTGTGTGACACGTGTCAAAATCTTACAAGAAGATGTCTCATTGGAGCTTCATTAGAGGTTATTCTTCCATCCACCATAAGCACCATAGAGAACCTTCCTAATGATGATAACATCAATAGAAATTGTTCAACAAAGAGGAAAAGTACAACTACCTTTCAGTTTCTGTAG 399 0.3409 MCKGTIDEKNHSSCKSFPPKENASICETKSSSSSISCELCGLKASLYCHSDNAYLCRKCDNLVHKANFLALRHVRCFLCDTCQNLTRRCLIGASLEVILPSTISTIENLPNDDNINRNCSTKRKSTTTFQFL 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01310 132 ProSiteProfiles Zinc finger B-box type profile. 32 73 IPR000315 GO:0008270
Trre8g01310 132 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 36 89 - -
Trre8g01310 132 SMART bboxneu5 32 78 IPR000315 GO:0008270
Trre8g01310 132 CDD Bbox1_BBX-like 37 78 - -
Trre8g01310 132 Pfam B-box zinc finger 35 73 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01310 Trre-Chr8 9731259 9731657 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01310 1 114 C2C2-CO-like Transcription Factor Family AT3G21890 43.802 2.55e-26 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre8g01310 zf-B_box 1.6e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01310 - - gmx:100305571 157.918