Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01304 ATGAGAAGAGATCGTGTTCTTGGTGAAAATGAAAACCGCACTTTGGTGCCAGCTGATTTAAGAGCACTATATTGGATATTGGGCTGCCTTGTGTTTTTTAATGTTGCATATTGGGTGTACTTCACCATTAGAAAGTGGGTAACTCCTCAAACTCTTAGAGTCGAACAAAATGAAATTCCTCATGTAACGCAGAATTCAGAAACTTTGATTCCAACAGCAGCACCACCACCAGCACCACCAGCACCACCACCACCACCACCACCACCACTTAATAGATTGGTGCATGTGAGTGAGGCCTCGTACAAGACATCACTTACTCTTGCGTTTAATCAAAAAGATTGTGCAATATGTTTGGAGGAATATATGAACCATGAAAAGCTATACATGTTAGTATGTGGTCATGCATTCCACAAGAATTGTATAACCACATATTTACGGGCAAATAATATTACTTGTCCGGTATGCAGATGGGTAGTGTAG 480 0.4083 MRRDRVLGENENRTLVPADLRALYWILGCLVFFNVAYWVYFTIRKWVTPQTLRVEQNEIPHVTQNSETLIPTAAPPPAPPAPPPPPPPPLNRLVHVSEASYKTSLTLAFNQKDCAICLEEYMNHEKLYMLVCGHAFHKNCITTYLRANNITCPVCRWVV 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01304 159 MobiDBLite consensus disorder prediction 72 89 - -
Trre8g01304 159 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Trre8g01304 159 MobiDBLite consensus disorder prediction 68 89 - -
Trre8g01304 159 SUPERFAMILY RING/U-box 113 159 - -
Trre8g01304 159 Pfam Ring finger domain 113 156 IPR001841 -
Trre8g01304 159 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 159 IPR013083 -
Trre8g01304 159 SMART ring_2 114 155 IPR001841 -
Trre8g01304 159 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF103 109 157 IPR042494 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01304 Trre-Chr8 9667974 9668453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01304 95 156 C3H Transcription Factor Family AT2G15530 40.323 1.27e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01304 K15695 K15692 ely:117260778 63.1586