Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01298 ATGGAAGTGACAAGAATCCGCGGTTGCGCGGTTATTTATGTCATCCTCCTTTGTGCTTTGGCTCAAGGGGGCTCTGAGGGGAAGAAGGAAGATGACCTTTATAAAGATGATCATCAACTTTTATCATCTTTCCTTCATATTCATGGAAAACAGGAAGAGAAAGTGTGGAAACATTGCATGAAAGAATTGATAGAGAGGAACAATGATGTGGAAGAAAGCAATGACATGAGATCTATTCTTTCAATAGAAAACAACATTCACAAAGCAACAAAATCATTACCTCTACATATGAAAAAACAAGTTCTGAACTGCATAAGAACAAGTGCTGCTTCTCCTGCTCCTGTTTCTGAAGTAAAAACTAGTTCAAGATACTTACTTAGAAAACATTCTAAATCAACCATAGCTTTAAAAACCGATCATCGTCATCATCATCACATAACAAGTTCAATTTCCGAATCACCACATAATCATATATCACCTATATCAACAATGTCGCCGAGTCCTAGTGCTAATAGTCCATCCCCTGAGCATAAATTAGTAGCACATATTCATGTTTCAACACCAGCAAGTGCTTCTTCGTCTTCACCATCACCGACACATGATCATGAATTGGTAGCACCAATTCATATTTCAGTACTAGCAAGTGCTTCTTCACCTTCACCGACACCTGTTCCTAATACCGGATTTAAATATTTACCCTTTCCTCCAGATAGTTTTGTTCAGTCTCCACCTCCCCCGAGTAAAAATATTGATCCTTCTCGTATTTCCAAACCTATAACAGATGCTCCAACTCCTTCACCTCCTGTTAACAATGAGGAAAGAAGAAAGAAAGCAATGACTTTAGCTGCTGCTGTGTCAGGAATCATAATCTTGATCGGATTGTCCCTTTGCTATCGCGAGTCCAGAAAGAGTAAAGCTAACAAAGATGACGGGCCTTTGCTCGTATTAACCTCAAATGATTTTCCTGGAGGTGCGCAGAAGGTTGTTCGATTGGGAAGTATTAATAATAAAGAAGAATCTGGTATTAACAAAGGAACGAATCCGTCTAATGTTACAAATTTGCCGATGAAGGTTGGAGATAATAACGATTCTTCACAAGTCGAAAAAACAACTATAGCAACAGTACAAGATATGGGACAACAAGTAACCGAAACTTCTTCTGGAAAACCAGCTCCTCCGCCTCCTGGTCCGCCTCCACCTCCTCCACCACGGGCACCTCCTATTGCTCCTCGTCCTCCACCACCTCCGAAAGCTGGTCATCCACCACCTGCTCCTCCGAAACCAATGGCTGGTAAAAACAAAGGTACACCTCTTGCACCAGCAAAAGATGGAAATTCTAATGAAGGTGATGCTCCAAAGCCGAAACTAAAGCCATTTTTCTGGGACAAGGTTAATGCTAAACCTGATCAATCAATGGTGTGGCATGAGATCAATGCAGGGTCATTTGTGTTCAATGAAGAAATGATGGAGTCTTTATTTGGATGCACCAACCAGAACAAAAATGAACGGAGAAAAGACTCACCTACTGTAGATACTTCAGTACATTATATTCAGATTATTGACCCTAAGAAAGCACAGAATTTATCAATTCTTTTACGCGCTCTGAATGTGACAACAGCAGAAGTTATTGATGCGCTTAACGAAGGTAATGAGCTTCCTTTGGAACTTATCCAAACATTGTTGAAGATGGCACCAACACAAGAAGAGGAACTGAAACTTAGGTTATTTTCTGGAGAACTAACTCAACTAGGCCCGGCAGAGAGGTTTCTCAAAGTATTGGTTGACATTCCTTTCGCTTTCCAACGTCTTGAATGTCTCATGTTCATGCTTATTCTTCGAGAAGAGGTTTCAAGCATTAAGGATTCCTTCGCAACATTAGAGGTTGCTTGCGACAAGCTGAGAAAAAGCAGATTATTCTTAAAACTACTAGAAGCAGTACTCAAAACTGGCAACCGTATGAACGATGGTACCTACCGCGGGGGTGCTCAAGCATTTAGGCTTGACACGCTTTTAAAACTTTCAGACGTAAAAGGAACAGACGGAAAAACAACATTGTTACACTTTGTGGTTCAAGAAATTATACGTTCTGAAGGAATAAGAGCAGTAAGAACCGAAAAAGCTAGTAGAAGCATTTCAAGCGTAGGAACCGAGGATGCAGATTATGAAAACGAAGATTCAGAAGAACATTATCGTAGTCTTGGACTTCAAGTAGTGTCAAGCTTAAGCAATGAACTCGAAGATGTTAAAAAAGCAGCATTAATAGACGGTGATGCATTGAGCAGTACGGTTTTGAAACTCGGTCACTCGTTGGTTAAGACTCAGGAGTTTATGAACAATGATCTTAAGAATTTGGAAGAAGAGAGTGAATTTCAAAGTTGTTTAGAGAAGTTTATGGAGCATGCGAAAGGAGAGGTGACGTTTCTTGTTGAAGAAGAAAAACGGATAATGGCATTGGTTAAGAGTACCGCGGATTATTTTCATGGAAATGCAGGGAAAGATGAAGGGTTGCGTTTGTTTTTGATCGTGCGTGATTTCTTGATCATATTGGATAAGGTTTGTAAAGAGGTTAAGGAAGCTACATTAAAGTCGATGAAGGCTTCAGTTAAGAAAGGGGCTTTGTCAGTGTCAGCGCCATCTTCACCGGAAGCACAAAATCAACAATTGTCGCCATCACAGCAATCAACATCGCCTTCTGATCTACATAGGCGACTATTTCCAGCTATTGCAGGGCGGAGACTGGATTATTCTAGTTCTGATGACGATGATGAGGAGTTTTAG 2778 0.4053 MEVTRIRGCAVIYVILLCALAQGGSEGKKEDDLYKDDHQLLSSFLHIHGKQEEKVWKHCMKELIERNNDVEESNDMRSILSIENNIHKATKSLPLHMKKQVLNCIRTSAASPAPVSEVKTSSRYLLRKHSKSTIALKTDHRHHHHITSSISESPHNHISPISTMSPSPSANSPSPEHKLVAHIHVSTPASASSSSPSPTHDHELVAPIHISVLASASSPSPTPVPNTGFKYLPFPPDSFVQSPPPPSKNIDPSRISKPITDAPTPSPPVNNEERRKKAMTLAAAVSGIIILIGLSLCYRESRKSKANKDDGPLLVLTSNDFPGGAQKVVRLGSINNKEESGINKGTNPSNVTNLPMKVGDNNDSSQVEKTTIATVQDMGQQVTETSSGKPAPPPPGPPPPPPPRAPPIAPRPPPPPKAGHPPPAPPKPMAGKNKGTPLAPAKDGNSNEGDAPKPKLKPFFWDKVNAKPDQSMVWHEINAGSFVFNEEMMESLFGCTNQNKNERRKDSPTVDTSVHYIQIIDPKKAQNLSILLRALNVTTAEVIDALNEGNELPLELIQTLLKMAPTQEEELKLRLFSGELTQLGPAERFLKVLVDIPFAFQRLECLMFMLILREEVSSIKDSFATLEVACDKLRKSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFRLDTLLKLSDVKGTDGKTTLLHFVVQEIIRSEGIRAVRTEKASRSISSVGTEDADYENEDSEEHYRSLGLQVVSSLSNELEDVKKAALIDGDALSSTVLKLGHSLVKTQEFMNNDLKNLEEESEFQSCLEKFMEHAKGEVTFLVEEEKRIMALVKSTADYFHGNAGKDEGLRLFLIVRDFLIILDKVCKEVKEATLKSMKASVKKGALSVSAPSSPEAQNQQLSPSQQSTSPSDLHRRLFPAIAGRRLDYSSSDDDDEEF 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01298 925 Pfam Formin Homology 2 Domain 450 849 IPR015425 -
Trre8g01298 925 PANTHER FORMIN-RELATED 263 917 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Trre8g01298 925 MobiDBLite consensus disorder prediction 235 272 - -
Trre8g01298 925 MobiDBLite consensus disorder prediction 237 251 - -
Trre8g01298 925 Gene3D Formin, FH2 domain 452 886 IPR042201 -
Trre8g01298 925 SMART it6_source 446 864 IPR015425 -
Trre8g01298 925 MobiDBLite consensus disorder prediction 873 900 - -
Trre8g01298 925 MobiDBLite consensus disorder prediction 151 174 - -
Trre8g01298 925 MobiDBLite consensus disorder prediction 336 366 - -
Trre8g01298 925 ProSiteProfiles Formin homology-2 (FH2) domain profile. 446 875 IPR015425 -
Trre8g01298 925 MobiDBLite consensus disorder prediction 388 430 - -
Trre8g01298 925 SUPERFAMILY Formin homology 2 domain (FH2 domain) 398 861 - -
Trre8g01298 925 MobiDBLite consensus disorder prediction 378 456 - -
Trre8g01298 925 MobiDBLite consensus disorder prediction 132 176 - -
Trre8g01298 925 MobiDBLite consensus disorder prediction 872 901 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01298 Trre-Chr8 9606602 9611249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01298 387 914 FH2 protein (formin) Gene Family AT5G54650 56.028 0.0 568
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01298 - - tpra:123921899 830.476