Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01294 ATGTTAGTGAAAAGCCAAAACAAAGGGGAGGGACCGAAGTCCCTCGCCGATACATTGGCAAAATGGAAAGAATACAATGCACGGCTTGAATCGAGCGGGGAAGCTGCGAAGCCAGTTAGGAAACTTCCTGCCAAGGGATCGAAAAAAGGGTGTATGAAAGGTAAAGGAGGACCCGAGAATTCGCGCTGTAATTACAGAGGTGTTAGGCAAAGGACTTGGGGAAAATGGGTGGCTGAAATTAGGGAGCCAAACAGAGGAAATAGGCTCTGGTTAGGTACATTTCCAAATGCGGTTGCTGCTGCTCTTGCTTATGACGAAGCAGCGCGGGCAATGTACGGTGCTTGCGCGCGTCTGAACTTTCCTAATGTAGAAGTATCCAATTTCTCTCAGCTGGAATCTTTGAAAGATTCTCCAAATGCAGATCAATCTGGTTTTGTAAAGACAGCATTGGAGAATGCTCCTGAGTTCATGATATCGCCAGATAACGCTTGTGTAGATGCAGCTGAGGATGTTGACATGAAACATCTTTCCTTATCCTTAAGTGTGACCGTGAATCACGAGGAAAAAGAGGGTGATTCGATGACTAGTTGA 591 0.4602 MLVKSQNKGEGPKSLADTLAKWKEYNARLESSGEAAKPVRKLPAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVAEIREPNRGNRLWLGTFPNAVAAALAYDEAARAMYGACARLNFPNVEVSNFSQLESLKDSPNADQSGFVKTALENAPEFMISPDNACVDAAEDVDMKHLSLSLSVTVNHEEKEGDSMTS 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01294 196 Pfam AP2 domain 63 113 IPR001471 GO:0003700|GO:0006355
Trre8g01294 196 FunFam Ethylene-responsive transcription factor 2 63 122 - -
Trre8g01294 196 CDD AP2 63 123 IPR001471 GO:0003700|GO:0006355
Trre8g01294 196 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 148 - -
Trre8g01294 196 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Trre8g01294 196 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Trre8g01294 196 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
Trre8g01294 196 MobiDBLite consensus disorder prediction 29 63 - -
Trre8g01294 196 Gene3D AP2/ERF domain 64 123 IPR036955 GO:0003700|GO:0006355
Trre8g01294 196 SUPERFAMILY DNA-binding domain 64 121 IPR016177 GO:0003677
Trre8g01294 196 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01294 Trre-Chr8 9582471 9583061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01294 2 134 AP2-EREBP Transcription Factor Family AT2G40350 55.474 2.00e-50 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre8g01294 AP2 5.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01294 - K09286 gmx:100499747 268.085