Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01280 ATGTGTGGAGCAAATAGAATAAGCAATCAACTGAGTGAACGTAGATCTAAAAGCTCATTCTATTGGATTCTTGGTTTAACTCTTACTGGTGTGGTTGCTCTAGCATGCATCATTATTTTCGGTTATGCATGCAGGCGAAGAATAGCTCGTATGTTTAAGCAAGATAAGGAAAACATACAAAGAAATGTTAGAGGGCAATTCTACGACAGTGAAAGACATGTGAAGAACTTGATAGACATGGAGGGATTGGAAGAGAATGATAATGAAGGAATAGAGGTTCCTTATTTCGATTTTGAGAGCATACTAATCGCCACAGATGACTTTTCAGATGCAAATAAACTCGGAAAAGGTGGCTTTGGGCCAGTTTACAAGGGTAAACTTGGTGGTCAAGAAATTGCGGTAAAGAGACTTTCAAGTGTTTCGTCACAAGGCTTACAGGAATTTAAGAATGAGGTTGTTTTGATTGCTAAACTTCAACATCGAAACCTTGTTAAATTACGGGGCTACTGCATAAAAGGGGAGGAAAAAATTCTGATTTATGAATATTTGCCTAACAAGAGTTTGGACTTATTGATATTTGATCCAACAAAATGCGTAATTTTGGATTGGCATATGCGGTTTGATATAATTCTCGGAATTGCTCGTGGACTGCTCTATCTTCATCAAGATTCAAGACTTAGAGTTATTCACCGAGATTTGAAAACTAGCAACATTCTTCTAGACGAGGAGATGCAACCAAAAATCTCGGATTTTGGACTAGCAAGAATATTTGGAGGTAAAGAAGTAGAGGCAAGCACAGAGAGGATTGTCGGTACATACGGATACATGTCTCCTGAATATGCATTGGATGGATATTTCTCAACAAAGTCAGATGTATTCAGTTTTGGCGTTGTCTTACTTGAAATCATTAGTGGAAAAAGAAACACCGGATTCTTCCGGTCAAAAGAAATTTCAAGCCTTTTGGGTTATGCTTGGAGACTATGGAGAGAGGAGAAATTGCAAGATTTAATGGACCCATCTCTATCCGATTCATACAATGTCAACCAATTTATTAGGTGTGCACAAATTGCACTCCTATGCGTGCAAGATGAACCTGATGATCGTCCAAACATGTCAAATGTGGTGACTATGTTAGACAATGAAACCACAGCCCTCTTAACCCCTAAACAACCAACCTTTTTTTCACGTAAAGACATGTCTAGTACAGCTTCTTCAAGTCTACAGATTGAGAGTAGCATTCAAGAAGGTCGATAG 1254 0.3844 MCGANRISNQLSERRSKSSFYWILGLTLTGVVALACIIIFGYACRRRIARMFKQDKENIQRNVRGQFYDSERHVKNLIDMEGLEENDNEGIEVPYFDFESILIATDDFSDANKLGKGGFGPVYKGKLGGQEIAVKRLSSVSSQGLQEFKNEVVLIAKLQHRNLVKLRGYCIKGEEKILIYEYLPNKSLDLLIFDPTKCVILDWHMRFDIILGIARGLLYLHQDSRLRVIHRDLKTSNILLDEEMQPKISDFGLARIFGGKEVEASTERIVGTYGYMSPEYALDGYFSTKSDVFSFGVVLLEIISGKRNTGFFRSKEISSLLGYAWRLWREEKLQDLMDPSLSDSYNVNQFIRCAQIALLCVQDEPDDRPNMSNVVTMLDNETTALLTPKQPTFFSRKDMSSTASSSLQIESSIQEGR 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01280 417 CDD STKc_IRAK 114 380 - -
Trre8g01280 417 Gene3D Phosphorylase Kinase; domain 1 70 182 - -
Trre8g01280 417 SUPERFAMILY Protein kinase-like (PK-like) 90 405 IPR011009 -
Trre8g01280 417 SMART serkin_6 108 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g01280 417 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 73 182 - -
Trre8g01280 417 Gene3D Transferase(Phosphotransferase) domain 1 183 391 - -
Trre8g01280 417 MobiDBLite consensus disorder prediction 395 417 - -
Trre8g01280 417 ProSiteProfiles Protein kinase domain profile. 108 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g01280 417 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 21 406 - -
Trre8g01280 417 ProSitePatterns Serine/Threonine protein kinases active-site signature. 228 240 IPR008271 GO:0004672|GO:0006468
Trre8g01280 417 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 183 386 - -
Trre8g01280 417 Pfam Protein tyrosine and serine/threonine kinase 112 378 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01280 Trre-Chr8 9488124 9490594 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01280 96 416 Receptor kinase-like Gene Family AT4G11530 56.535 4.05e-129 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre8g01280 PK_Tyr_Ser-Thr 1.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01280 - - tpra:123882048 694.886