Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01275 ATGTGTATATGGTATCACATACAAGAAGGGTCAGAACAACCTCAAAAACAAACAGTTGTGTGGGTTGCAAACAGAGACAAACCTATAGCTGTTGATTCAACTGGAGTTTTTCAAATAGCTGAAGATGGAAATCTTGTGATTGTAGACACAAACATATCTGGTAGGAATATTACATACTGGTCATCCAATTCCAATGTCATCAAACACTCTTCTAATTCTTCGCCGAAAAACAGAACAGTGAAGCTTATGGATTCTGGTAACCTAGTGTTACTAGATGATGAACAGAAGGAAGTAAAACTCTGGCAGAGTTTGGAAAATCCATCTGATACATTCCTACCAGGAATGAAGATGAATAGGAATTTGAAACTGTCAAGTTGGAAAAATTCTGATGATCCAGGAAGTGGAAATTTCACATTTAAGATGGAACAAATTAGTGGGCTCAATCGTTTTAAGATCTTAAACTTAGATGAAATTTATTGGGAGAGTGAAGAGTATGGATCTTTGACTTATGATTCAAAGATTGATCAATCTGATGATATCAGCTCAGTGGTTTATAATCTGTTGACAAATTTCAGCTTACCTATACTGCGCAAACTAATACCTATGAACAGTTATGACAATACAAGGTTGTTTCTTGATTCTAAAGGTGTGATTCAGTGGGTGGATAATTTGTTGGTAGGTGGTGGTGATTTGTTCGTTAGGTCAAGGTGGAATCAGCCAAAAACCAAATGTTTAAGATATGATTTTTGTGGAAACTTTGCGAGCTGTAACGATGATGATTTTGAGTCATGCAAATGTTTAGCTGGATTCTACGATGATTATTCAGGAGACGGAGATTCTTCTCCACAAGACAAGCTACGTTGTGCGCGGAGAAAATCACCATCATGTACCGGAAATGACACGGTGTTTCTAAACTTGACAAAGATTAAAACAGGAAGACCTGATCAAAAATTCAATGTGGAATATGAAGAAGATTGTAAATCTATATGCCTTGCGAGATGTCCACAGTGCCAAGCTTACTCATATGCTCCACCCTCGACTGATCGCCAGCGTAGTGGTCCTATTCTATCAAACTGTTGGATCTGGAATAACAGTTTAACTACTCTTAAAGAAAACTACACTTACGGGGATGATAGTCGCAGAATCTTTGTTTTAGTTGACAAATCAGATATAGAAGCAACTCCAAGAACTTGTGAGCCTTGTGGTACAAACATGGTCCCTTATCCACTTAGTACCGGAACCAATTGTGGAGACCTCAAATACTTTAACTTTGGATGCAACACTTCGACGGGTCAACTTAACTTCACCACCAGCAACAAACTTAGTTACAAAGTTATTCGTGTAAAGCCTATTTCAAGAACATTTACCTTTCATAATGAGGATAGTTCTCTTAATCGAAATTGTGGTGATGGATCTAACCGCACGGGAAATCTTAAGGTTTTTTCACCGTTTCACAGTGATAATTCATGCAACGAAAGAGTGGAAGTTAGTTGGGAACCACCATCCGAGGAACCTGTTTGTGATAACTCTGTTGATTGCCATGGTTGGAGAAATTCTACTTGTAGTAAAGGAAATAGGTGTCTTTGCAATGCAAACTATCGTTGGAGTGGCGAGATTTTAAGTTGTACCGAAAGTTTTTTAGAACCTACATCATCTCCTAATGCTACAAAAGATTCAACAAAAGGAAACTCCAAAAGCTCATTAGCTTTGATTCTTGGCTTAACTATTGGACTGGTTATTTTAGCTTGCATAATTATTTTTGCTTATGTATGCAGACGGAGAATAGCTCCTATCGTTAAAAAAGAGAATGAACACATACAGAGAAATATTAGAGGGGGCTTTTATGACAGTGAAAGACATGTGAAGGACTTAATAGACATGGAGGGATTGGAAGAGAATGACAATGAAGGAATCGAGGTTCCTTATTTCGATTTCGAGAGCATAGTAATGGCCACAAATGACTTTTCAGATGAAAATAAGCTTGGAAGAGGTGGTTATGGGCCAGTGTACAAGGGTAAGCTTCAAGGTGGTCAAGAAATTGCGGTAAAGAGGCTTTCGAGTGTTTCTTCTCAAGGATTACAAGAATTCAAGAATGAGGTTGTTTTGATTGCAAAACTTCAGCATCGAAACCTTGTAAAATTACGGGGCTACTGCATAAAAGGGGAAGAAAAAATTTTAATTTATGAGTATTTGCCTAACAAAAGTTTGGACTTATTGATATTTGATCCAACAAAATGCGTAATTTTGGATTGGCAAATGCGGTTTGATATAATTCTTGGAATTGCCCGTGGAATGCTCTATCTTCATCAAGATTCAAGACTTAGAGTTATTCACCGAGATTTGAAAACTAGCAACATTCTTCTAGACGAGGAGATGCAACCAAAAATCTTGGATTTTGGACTAGCAAGAATATTTGGTGGTAAAGAAGTAGAGGCAAGCACAGAGAGGATTGTCGGTACATACGGGTACATGTCTCCTGAATATGCATTGGATGGATATTTCTCAACAAAGTCAGATGTTTTCAGTTTTGGCGTTGTCTTGCTTGAAATCATCAGTGGAAAAAGAAACACCGGATTCTTCCGGTCAAAAGAAATTTCAAGCCTTTTGGGTTATGCTTGGAGACTATGGAGAGAGGAGAAATTGCAAGATTTAATGGACCCATCTCTATCCGATTCATACAATGTCAACCAATTTATTAGGTGTGCACAAATTGCACTCCTATGCGTGCAAGATGAACCTGATGATCGTCCAAACATGTCAAATGTGGTGACTATGTTAGACAATGAAACCACAGCCCTCTTAACCCCTAAACAACCAACCTTTTTTTCACGTAAAGACATGTCTAGTACAGCTTCTTCAAGTCTACAGATTGAGAGTAGCATTCAAGAAGGTCGATAG 2898 0.3803 MCIWYHIQEGSEQPQKQTVVWVANRDKPIAVDSTGVFQIAEDGNLVIVDTNISGRNITYWSSNSNVIKHSSNSSPKNRTVKLMDSGNLVLLDDEQKEVKLWQSLENPSDTFLPGMKMNRNLKLSSWKNSDDPGSGNFTFKMEQISGLNRFKILNLDEIYWESEEYGSLTYDSKIDQSDDISSVVYNLLTNFSLPILRKLIPMNSYDNTRLFLDSKGVIQWVDNLLVGGGDLFVRSRWNQPKTKCLRYDFCGNFASCNDDDFESCKCLAGFYDDYSGDGDSSPQDKLRCARRKSPSCTGNDTVFLNLTKIKTGRPDQKFNVEYEEDCKSICLARCPQCQAYSYAPPSTDRQRSGPILSNCWIWNNSLTTLKENYTYGDDSRRIFVLVDKSDIEATPRTCEPCGTNMVPYPLSTGTNCGDLKYFNFGCNTSTGQLNFTTSNKLSYKVIRVKPISRTFTFHNEDSSLNRNCGDGSNRTGNLKVFSPFHSDNSCNERVEVSWEPPSEEPVCDNSVDCHGWRNSTCSKGNRCLCNANYRWSGEILSCTESFLEPTSSPNATKDSTKGNSKSSLALILGLTIGLVILACIIIFAYVCRRRIAPIVKKENEHIQRNIRGGFYDSERHVKDLIDMEGLEENDNEGIEVPYFDFESIVMATNDFSDENKLGRGGYGPVYKGKLQGGQEIAVKRLSSVSSQGLQEFKNEVVLIAKLQHRNLVKLRGYCIKGEEKILIYEYLPNKSLDLLIFDPTKCVILDWQMRFDIILGIARGMLYLHQDSRLRVIHRDLKTSNILLDEEMQPKILDFGLARIFGGKEVEASTERIVGTYGYMSPEYALDGYFSTKSDVFSFGVVLLEIISGKRNTGFFRSKEISSLLGYAWRLWREEKLQDLMDPSLSDSYNVNQFIRCAQIALLCVQDEPDDRPNMSNVVTMLDNETTALLTPKQPTFFSRKDMSSTASSSLQIESSIQEGR 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01275 965 Pfam S-locus glycoprotein domain 203 271 IPR000858 GO:0048544
Trre8g01275 965 SUPERFAMILY alpha-D-mannose-specific plant lectins 19 132 IPR036426 -
Trre8g01275 965 Gene3D Phosphorylase Kinase; domain 1 621 730 - -
Trre8g01275 965 Gene3D Transferase(Phosphotransferase) domain 1 731 938 - -
Trre8g01275 965 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 620 730 - -
Trre8g01275 965 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 81 948 - -
Trre8g01275 965 ProSiteProfiles Protein kinase domain profile. 655 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g01275 965 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 731 934 - -
Trre8g01275 965 CDD B_lectin 1 107 IPR001480 -
Trre8g01275 965 ProSitePatterns Serine/Threonine protein kinases active-site signature. 776 788 IPR008271 GO:0004672|GO:0006468
Trre8g01275 965 SUPERFAMILY Protein kinase-like (PK-like) 637 952 IPR011009 -
Trre8g01275 965 Gene3D - 2 105 IPR036426 -
Trre8g01275 965 Pfam D-mannose binding lectin 18 122 IPR001480 -
Trre8g01275 965 SMART blect_4 1 107 IPR001480 -
Trre8g01275 965 ProSiteProfiles Bulb-type lectin domain profile. 1 103 IPR001480 -
Trre8g01275 965 SMART serkin_6 655 926 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g01275 965 CDD STKc_IRAK 661 928 - -
Trre8g01275 965 MobiDBLite consensus disorder prediction 943 965 - -
Trre8g01275 965 ProSiteProfiles PAN/Apple domain profile. 296 387 IPR003609 -
Trre8g01275 965 Pfam Protein tyrosine and serine/threonine kinase 658 926 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01275 Trre-Chr8 9464042 9468023 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01275 643 964 Receptor kinase-like Gene Family AT4G11530 56.231 2.03e-122 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre8g01275 PK_Tyr_Ser-Thr 8.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01275 - - tpra:123882048 1658.27