Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01264 ATGGCAAGAACTCCTTCATGTGACAAAAGTGGAATGAGGAAAGGGACTTGGACTGCTGAAGAAGATAAGAAATTAATAGCTTATGTAACTAGATATGGTTGCTGGAATTGGCGCCAACTACCTAAGTTTGCAGGTCTTGCAAGATGTGGCAAGAGTTGTAGATTGAGGTGGATGAATTATCTAAGGCCTAATATCAAAAGAGGGAATTTCTCTCAACAAGAAGAAGAATTGATTATCACAATGCATAAAAAGCTTGGCAATAGATGGTCAACTATTTCGGCGGAATTACCTGGAAGAACGGATAATGAAGTGAAGAACCATTGGCATACTTCCCTCAAGAAGAGAGTTCAAAACAACACAATCATAAATATTGAAGAAACCAAAGTTACCAAATCAATAGATATTGCCATTTTCCAAGTTACTACTCCAACTAGTTCCCAAGACACTAATGGCCCATTATCCCCATTTTCATCATCAAGTGAATTCTCTTCCACAACGTATTCAGACCAAAGTTCCAATCATGATTTGGATGATTTTGGTTTTCTAGATGCATTTATAGAATCTATGGATCAAAGTTTTTGGCTTGATGACCTTTCCACAATTGTGCAAGACAATACTAGTTGTGCTTTTCAAAATCAAGATACTACTATTTTAGTCTCTCCTAATGATTCGTCTAATGAAAGTTTGGGATTGGATAATGACATTGCCAGCTTTCTAAATTCGTACCAAGAGTCAACAGTTGATAGTTTTTGGACACATCCGTATGAAGCTGACATGTCCCACGTTCTAAACCACAATCATTGGTCTTTCTAA 813 0.3702 MARTPSCDKSGMRKGTWTAEEDKKLIAYVTRYGCWNWRQLPKFAGLARCGKSCRLRWMNYLRPNIKRGNFSQQEEELIITMHKKLGNRWSTISAELPGRTDNEVKNHWHTSLKKRVQNNTIINIEETKVTKSIDIAIFQVTTPTSSQDTNGPLSPFSSSSEFSSTTYSDQSSNHDLDDFGFLDAFIESMDQSFWLDDLSTIVQDNTSCAFQNQDTTILVSPNDSSNESLGLDNDIASFLNSYQESTVDSFWTHPYEADMSHVLNHNHWSF 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01264 270 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Trre8g01264 270 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre8g01264 270 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Trre8g01264 270 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Trre8g01264 270 CDD SANT 69 112 IPR001005 -
Trre8g01264 270 FunFam MYB-related transcription factor 13 66 - -
Trre8g01264 270 SMART sant 66 114 IPR001005 -
Trre8g01264 270 SMART sant 13 63 IPR001005 -
Trre8g01264 270 CDD SANT 16 61 IPR001005 -
Trre8g01264 270 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 208 - -
Trre8g01264 270 Gene3D - 68 134 - -
Trre8g01264 270 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trre8g01264 270 MobiDBLite consensus disorder prediction 143 171 - -
Trre8g01264 270 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Trre8g01264 270 Gene3D - 14 66 - -
Trre8g01264 270 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01264 Trre-Chr8 9399496 9400542 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01264 1 200 MYB Transcription Factor Family AT2G31180 49.000 1.09e-61 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre8g01264 Myb_DNA-binding 8.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01264 K09422 - gmx:100777107 313.153