Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01263 ATGAGGAAAGGAACATGGACTGCTGAGGAAGATAGGAAATTAATTGCTTATGTAACTAGATATGGTTGTTGGAATTGGCGCCAACTCCCTAAATTTGCAGGTCTTGCAAGATGTGGGAAGAGTTGTAGATTAAGGTGGATGAATTATTTAAGGCCTAATATCAAAAGAGGGAACTACACTCAACAAGAAGATGAGTTGATTATCTCAATGCATGCAAAGCTTGGCAATAGATGGTCAACCATAGCGGCGAATTTACCTGGAAGAACAGATAACGAAGTGAAGAACCATTGGCATACTTCCCTAAAAAAGAAAGTTCAAAACAACACATCAATCACAAATGACGAAATGAAATCAAAACACATTGAATCCACACAAGAAAGGGTTATCTCCTTTTCCCAAGTTACTACTCCAACTAGTTCCCAAGATACCAATGGCCCATTATCCCCATTTTCATCATCAAGTGAATTCTCTTCCACAACATATTCAGATCACAATTCCATTCATGATTTGGATGATTTGAGTTTTGTAGATGCTTTTATTGAATCTATGGATCAAAGTTTTTTGTTGGATGACCTTACCAACACACCAAATGGAATAGTGCAAAATAATACTAATTGTGCTTTTCAAAATCAAGATACTTCTCTAGAGTCTCCAAATCATTCGTCCAATGAAAGTAATTTGGTTCTGGATAATGATTTTGGCAGCTTTGTAGAAGCGTACAATGATTCAACAGTTGATAATTTTTGGACACAAGCATATGAAGTTGACATGTCCCTTGTTCCAAGCAACATGCTGACAACTTTGCCGATGGAATCGGAATATTTTTCTGAAGTATATGATGAGGATCTATGGAGTTGA 858 0.3671 MRKGTWTAEEDRKLIAYVTRYGCWNWRQLPKFAGLARCGKSCRLRWMNYLRPNIKRGNYTQQEDELIISMHAKLGNRWSTIAANLPGRTDNEVKNHWHTSLKKKVQNNTSITNDEMKSKHIESTQERVISFSQVTTPTSSQDTNGPLSPFSSSSEFSSTTYSDHNSIHDLDDLSFVDAFIESMDQSFLLDDLTNTPNGIVQNNTNCAFQNQDTSLESPNHSSNESNLVLDNDFGSFVEAYNDSTVDNFWTQAYEVDMSLVPSNMLTTLPMESEYFSEVYDEDLWS 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01263 285 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Trre8g01263 285 SUPERFAMILY Homeodomain-like 2 97 IPR009057 -
Trre8g01263 285 SMART sant 55 103 IPR001005 -
Trre8g01263 285 SMART sant 2 52 IPR001005 -
Trre8g01263 285 MobiDBLite consensus disorder prediction 134 155 - -
Trre8g01263 285 Gene3D - 57 129 - -
Trre8g01263 285 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 209 - -
Trre8g01263 285 Gene3D - 3 55 - -
Trre8g01263 285 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 105 IPR017930 -
Trre8g01263 285 ProSiteProfiles Myb-like domain profile. 1 50 IPR001005 -
Trre8g01263 285 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 50 IPR017930 -
Trre8g01263 285 Pfam Myb-like DNA-binding domain 56 99 IPR001005 -
Trre8g01263 285 Pfam Myb-like DNA-binding domain 3 50 IPR001005 -
Trre8g01263 285 CDD SANT 58 101 IPR001005 -
Trre8g01263 285 FunFam MYB-related transcription factor 2 55 - -
Trre8g01263 285 CDD SANT 5 50 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01263 Trre-Chr8 9375360 9386297 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01263 1 115 MYB Transcription Factor Family AT1G06180 64.348 1.07e-51 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre8g01263 Myb_DNA-binding 3.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01263 K09422 - gmx:100777107 313.153