Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01262 ATGGTAAGAGGTCCATTCTATGACAAAAATGGAGTTAAGAAAGGTGCATGGAGTAAAGAAGAAGATGAATGTTTAAGTGATTATATTCATAAACATGGTCATTCTAATTGGCGTCAACTCCCTAAGCTTGCAGGTTTAACAAGGTGTGGAAAAAGTTGCAGACTTCGTTGGTTGAATTACTTAAAGCCAAATCTTAAACATGGGAACTACACAAGAGAAGAAGAGGAAATGATCATCAAATTACACCACCATTTTGGAAATAAATGGTCATTAATTGCTGAAAAACTGCCCGGAAGAACGGATCATGAGATAAAGAACTATTGGCATAGCTACTTAAAAAAGTGCTTAAAGGGCAACCAGAACACAATGTTGGACTTGAAATTGAAACCATGTGATAATGTTGAAGAAAATGATACTCAACATTCTGTAACACCCAAAAGCCCAATTTCTAATGTTGGTAAGGACTTCCATTATATTTTAGAAAGCTCAACATTGCCACCTATGCTCGCGGCTGAAACATCACCAGAAGACAATTATTTGTCGAGCTCAACATCGCCTATGCTCGCGACTGAAACATCATCAGAAGACAATTATTCGCCGAGCTCAACATTGCCTATGCTCGCGGCTGAAACATCACCAGAAGATAATTATTCGCCAACTGAAACATCACCAAAAGACAATTATTCGCCTAGTTCAACGCACAGCCACGGAATAGAAGAAGACAATGTTGCTCAATGGTTAACCTTTGAATCATTCAGCGGCGATTTTTGGACAGAACCATTCATCATAGAAGATACATACACCACCAATGAGATATCAAATGAAGACATAGACTTCTTGATTTCAGACTTCTATGATGGTTCATACGTGTTTTAG 876 0.3813 MVRGPFYDKNGVKKGAWSKEEDECLSDYIHKHGHSNWRQLPKLAGLTRCGKSCRLRWLNYLKPNLKHGNYTREEEEMIIKLHHHFGNKWSLIAEKLPGRTDHEIKNYWHSYLKKCLKGNQNTMLDLKLKPCDNVEENDTQHSVTPKSPISNVGKDFHYILESSTLPPMLAAETSPEDNYLSSSTSPMLATETSSEDNYSPSSTLPMLAAETSPEDNYSPTETSPKDNYSPSSTHSHGIEEDNVAQWLTFESFSGDFWTEPFIIEDTYTTNEISNEDIDFLISDFYDGSYVF 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01262 291 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre8g01262 291 CDD SANT 69 112 IPR001005 -
Trre8g01262 291 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trre8g01262 291 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 226 - -
Trre8g01262 291 CDD SANT 16 61 IPR001005 -
Trre8g01262 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Trre8g01262 291 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Trre8g01262 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Trre8g01262 291 MobiDBLite consensus disorder prediction 169 237 - -
Trre8g01262 291 MobiDBLite consensus disorder prediction 175 237 - -
Trre8g01262 291 Gene3D - 13 66 - -
Trre8g01262 291 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Trre8g01262 291 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre8g01262 291 FunFam Transcription factor RAX3 7 67 - -
Trre8g01262 291 SMART sant 66 114 IPR001005 -
Trre8g01262 291 SMART sant 13 63 IPR001005 -
Trre8g01262 291 Gene3D - 69 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01262 Trre-Chr8 9357433 9359317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01262 1 127 MYB Transcription Factor Family AT2G31180 62.205 9.84e-54 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre8g01262 Myb_DNA-binding 1.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01262 K09422 - gmx:100782270 236.884