Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01259 ATGGTAAGAGCACCTTATTTTGACGAAAATGGAACAAAGAAAGGTGCATGGAGTGAGGAAGAGGATCAAAGGCTTATTGCTTACATTGAAAGACATGGTCATCCTAATTGGCGTCAACTTCCCAAAGTTGCCGGTTTGGCAAGATGTGGAAAAAGTTGTAGGCTACGTTGGATGAATTACTTGAGGCCAAATCTAAAACAAGGGAATTATACACAAAAGGAGCAACAAATTATCATTGAATTGCACAAAAAGCATGGAAATAAATGGTCCCTTATAGCTGAAAATCTACCCGGAAGATCAGACAATAAAATAAAAAATTATTGGCACAGCCACCTAAAGAAAATCTCACGGCGCAATGAGACCAACCTTATTAAAGAGACTCAAAAGACAAAAACAGCAGCAAGTGAGCAAGTTAATGACCACATTTTGGAAAGTTCAACTTCAATGTCCTCTTGTCATGTGGAATTAAACATGAACTTGTATAGAAAAGAAGATTGTGTTGCTTCTTGGGAAATATGGGATGGATTCAGCAACAATTTTTGGACTGAACCATTTATTTCAGAAAATGCATTAGATCAGGATTACTCTCCCGTTTCATGGTATGGATCAGAGTCAGAGGATCCATTTTTCATATGGTAG 639 0.3756 MVRAPYFDENGTKKGAWSEEEDQRLIAYIERHGHPNWRQLPKVAGLARCGKSCRLRWMNYLRPNLKQGNYTQKEQQIIIELHKKHGNKWSLIAENLPGRSDNKIKNYWHSHLKKISRRNETNLIKETQKTKTAASEQVNDHILESSTSMSSCHVELNMNLYRKEDCVASWEIWDGFSNNFWTEPFISENALDQDYSPVSWYGSESEDPFFIW 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01259 212 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Trre8g01259 212 CDD SANT 69 112 IPR001005 -
Trre8g01259 212 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Trre8g01259 212 FunFam MYB-related transcription factor 13 66 - -
Trre8g01259 212 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trre8g01259 212 CDD SANT 16 61 IPR001005 -
Trre8g01259 212 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Trre8g01259 212 Gene3D - 7 67 - -
Trre8g01259 212 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 146 - -
Trre8g01259 212 SMART sant 13 63 IPR001005 -
Trre8g01259 212 SMART sant 66 114 IPR001005 -
Trre8g01259 212 Gene3D - 69 115 - -
Trre8g01259 212 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Trre8g01259 212 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre8g01259 212 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01259 Trre-Chr8 9336952 9339078 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01259 1 114 MYB Transcription Factor Family AT5G16770 65.789 2.72e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre8g01259 Myb_DNA-binding 7.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01259 K09422 - gmx:100782270 301.982