Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01248 ATGAGTTGGTCTTCCTTTTATAACACAGCCTCAAGGATTTTTCATGAGTATCCATCTTGGTCCAAGACTCTTGTTGTATGCGCATTCATTAGTGGTGGAGGTATAGTGGCATATGGTGATGGAAGAGCAGCATATAGTGATTGTGGTGATCAAAGCCCAAAAAAGAAAGTGGTGGTGCTTGGAACTGGTTGGGCTGGAACCAGTTTTGTGAAAAACATGAAAAACTCTTCTTATGATATTCATGTGGTTTCACCTCGTAATTATTTTGCATTCACTCCTTTGCTACCAAGTGTCACTTGTGGCACAGTCGAGGCACGTAGCGTTATTGAACCAATTCGAAATATCAGCAGAAAGAGTGGTTTAGATATTGAATTCAGTGAAGCTGAATGCTATAAGATTGATCCAAAGAACAACAAAGTTTACTGCAGAGCTTCTAATCAAGACAAAAAGCTCGGTGGAATAGAAGAATTTTCCATTGATTATGATTACTTAGTAATAGCTATGGGAGGTCGTTCCAATACCTTTAACACACCCGGTGTTCAAGAGCATGCCTTCTTCTTGAAGGAAGTGGAAGATGCTTTAAGAATCCGGAAAAAAGTGATTAGCCTTTTTGAAAGAGCAAGTCTCCCTTCTGTACCGGTGGAAGAGAAGAAAAAGCTTCTGAGTTTTGTAGTTGTTGGTGGCGGTCCAACTGGTGTAGAGTTTGCCGCAGAACTACATGACTTTGTGCATGAAGATTTGTCTAAATTATATCCTTCTCTTATAGAACATGTCAAGATTACTCTCCTCGAGGCTGGTGATCATATCTTAAACATGTTTGACAAGAGAATAACAGAATTTGCCGAAGAAAAGTTCAAAAGAGATGGAATTGATGTGAAATTGGGATCTATGGTTGTGAAGGTTGGTGAAAAAGATATATCATCCAAAGAAAGAGGAAGTGGTCAAGTTGTAACTATTCCTCATGGGATGGTAGTTTGGTCAACTGGTATCGGTGCTCGTCCTGAAATTATTGATTTCATGAAGCAACTTGGCCAGATTAATCGCCGTGCATTGGTCACCGATGAATGGCTAAGGGTAGAAGGGTGTGATAACATCTATGCTCTAGGTGATTGTGCCACTATAAATCAACGTAGAGTTATGGAAGATATAGCAGTGATATTTAGTAAGGCGGACAAGGACAATTCCGGAATGTTAGATCTTAAAGAATTTCAAAACGTTGTTGACGACATTATCGAGAGGTATCCACAAGTGGAAATTTATTTAAAGAAGAATCAAATGAAAGACATGGCTACTTTGCTAAACAAAGCTCTGGAAAACCCTGCAACTACTGTGGACATTGAATACTTTAAACAAGCTGTTTCCGAAGTTGATTCTCAAATGAAAAATCTTCCTGCAACAGCTCAGGTAGCTGCTCAACAAGGAGCCTATCTTGCAGACTGTTTTAATCGCATGGAATTGTGCGAGAAATATCCGGAAGGCCCTATAAGGTTTAGGGGAACAGGACGCCATCGGTTTCATGCTTTCAGGTACAAACATTTTGGACAATTTGCTCCTCTTGGTGGAGAACAAACAGCAGCTCAACTTCCAGGAGATTGGGTTTCAATTGGTCATAGCAGCCAATGGTTGTGGTATTCAGTATATGCAAGCAAACTAGTGAGCTGGAGAACAAGAGCTTTGGTGATATCTGACTGGGGAAGGAGATTTGTATTTGGCAGGGACTCAAGTGAAATATGA 1734 0.4025 MSWSSFYNTASRIFHEYPSWSKTLVVCAFISGGGIVAYGDGRAAYSDCGDQSPKKKVVVLGTGWAGTSFVKNMKNSSYDIHVVSPRNYFAFTPLLPSVTCGTVEARSVIEPIRNISRKSGLDIEFSEAECYKIDPKNNKVYCRASNQDKKLGGIEEFSIDYDYLVIAMGGRSNTFNTPGVQEHAFFLKEVEDALRIRKKVISLFERASLPSVPVEEKKKLLSFVVVGGGPTGVEFAAELHDFVHEDLSKLYPSLIEHVKITLLEAGDHILNMFDKRITEFAEEKFKRDGIDVKLGSMVVKVGEKDISSKERGSGQVVTIPHGMVVWSTGIGARPEIIDFMKQLGQINRRALVTDEWLRVEGCDNIYALGDCATINQRRVMEDIAVIFSKADKDNSGMLDLKEFQNVVDDIIERYPQVEIYLKKNQMKDMATLLNKALENPATTVDIEYFKQAVSEVDSQMKNLPATAQVAAQQGAYLADCFNRMELCEKYPEGPIRFRGTGRHRFHAFRYKHFGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKLVSWRTRALVISDWGRRFVFGRDSSEI 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01248 577 SUPERFAMILY EF-hand 372 461 IPR011992 -
Trre8g01248 577 Gene3D - 48 436 - -
Trre8g01248 577 Gene3D - 439 576 - -
Trre8g01248 577 SUPERFAMILY FAD/NAD(P)-binding domain 215 375 IPR036188 -
Trre8g01248 577 PRINTS FAD-dependent pyridine nucleotide reductase signature 57 76 - -
Trre8g01248 577 PRINTS FAD-dependent pyridine nucleotide reductase signature 222 240 - -
Trre8g01248 577 PRINTS FAD-dependent pyridine nucleotide reductase signature 161 179 - -
Trre8g01248 577 PRINTS FAD-dependent pyridine nucleotide reductase signature 350 372 - -
Trre8g01248 577 ProSiteProfiles EF-hand calcium-binding domain profile. 378 413 IPR002048 GO:0005509
Trre8g01248 577 PANTHER NADH DEHYDROGENASE 50 577 IPR045024 GO:0003954|GO:0006116
Trre8g01248 577 ProSitePatterns EF-hand calcium-binding domain. 391 403 IPR018247 -
Trre8g01248 577 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 46 407 - -
Trre8g01248 577 SUPERFAMILY FAD/NAD(P)-binding domain 54 274 IPR036188 -
Trre8g01248 577 Pfam Pyridine nucleotide-disulphide oxidoreductase 55 381 IPR023753 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01248 Trre-Chr8 9242792 9247321 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01248 5 577 Chloroplast and Mitochondria Gene Families AT4G21490 68.912 0.0 800
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01248 K03885 - gmx:100820044 964.911