Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01247 ATGACGATTGCTTCCTTCTTCATCACAGCCTCCAAGGCTATTAACAACCGCCCTTTCTGCTCCGGTCTTCTTCTTCTCTGCACTATCAGCGGCGGAGGTGTGGTGGCACTCTCAGAGTCACAATCAGAAGCTCAACGTCCTAATATTGAAGATCATCAGCCCCGAAAAAAGAAAATTGTGGTCCTTGGAACTGGATGGGCTGCTACGAGTTTCCTTAAGGGTTTGGATGCTTCAATGTATGATGTTCAAGTTGTTTCGCCTCGTAACTACTTTGCATTTACTCCCTTATTACCGAGTGTCACTTGTGGATCAGTTGAAGCACGGAGCGTCGTAGAACCGATCCGAAACATCATTAAAAAGAGTAAAGGAGAAATAAAATTTTGGGAGGCAGAATGTGTCAAGATTAATGCTGCAGATAAGAAAGTTTTTTGTCGGTCTAATATTGAAAATTTAGTGGGAAGTGGTGATTTTTCTCTGGACTATGACTTCTTGGTTGTATCAGTAGGAGCACAAGTAAATACTTTCAATACACCTGGTGTCAAGGAGAACTGTCATTTTCTGAAGAATGTTGAGGACGCTCAAAAGATCAGACTGTCTGTGATAGATTGTCTTGAGAAGGCTGTTCTTCCTAGTCAATCTGAAGAGGAACAAAGGTCAAATCTTCATTTTGTAATCGTTGGAGGAGGACCAACTGGTGTCGAATTTGCTGCAGAGCTGCATGATTATATCCAAGAAGATTTGATCAATTTATACCCAACCGTTAAAGATAAAGTGAAGATAACGTTAATTCAATCTGGAGATCACATCTTGAATATGTTCGATGAAAGAATAAGTATGTTTGCTGAGCAGAAGTTTAGGAGAGATGGTATAGAAGTTCAAACTGGATGCCGGGTTTTGAGTGTTGATGACAAGGCGATTACAATGAAGGCGAAATCAACAGGAGCGGTTTCCTCTTTGCCACATGGATTGATTATCTGGTCCACCGGAATTTCTACTCTTCCAGTTATACGGGACTTTATGGAAGAAATTGGTCAGACTAAAAGGCATGTACTTGCAACTGATGAATGGTTGAGAGTACAGGGATGTAAAGATGTGTTTGCAATTGGTGATTGTTCATCAATAAATCAACGTAAAATCATGGATGATATCTTGGACATATTTAAGGCTGCAGACAAAAATAACTCTGGTACCTTAACCGTAGAAGAATTCGAAGAAGTGATGGATGACATAATCTTAAGATATCCTCAAGTTGAATACTATCTACAGAAGAACCATATACTTGATTTGAGGGTTCTGTGGAACGACCCAGAAGGGAATGAAAGAAAAGAAATAGACATAGAAGGGTTTAAACGGGCCCTTTCTTTTGCAGATTCACAGGTGAAGACTCTTCCAGCAACTGCACAGGTTGCGGCTCAACAAGGTGCATATCTAGCTAGTTGCTTTAATCATGTTGATCTTTGTTTAGACCATCCAGAAGGACCTCGACGATTTTCAGGATCCGGACATCATATGTTTCGTCCCTTCCGGTATAAACATTTTGGGCAATTTGCTCCACTGGGTGGGGAGCAAGCAGCGGCAGAACTTCCTGGAGACTGGGTTTCCATTGGTCACAGCACTCAATGGCTTTGGTATTCTGTATATGCAAGCAAGCAAGTGAGTTGGCGCACACGGTATTTGGTTGTGTCTGATTGGACTAGAAAATTCATATTTGGAAGGGATTCAAGTCGAGTTTGA 1734 0.4135 MTIASFFITASKAINNRPFCSGLLLLCTISGGGVVALSESQSEAQRPNIEDHQPRKKKIVVLGTGWAATSFLKGLDASMYDVQVVSPRNYFAFTPLLPSVTCGSVEARSVVEPIRNIIKKSKGEIKFWEAECVKINAADKKVFCRSNIENLVGSGDFSLDYDFLVVSVGAQVNTFNTPGVKENCHFLKNVEDAQKIRLSVIDCLEKAVLPSQSEEEQRSNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDKVKITLIQSGDHILNMFDERISMFAEQKFRRDGIEVQTGCRVLSVDDKAITMKAKSTGAVSSLPHGLIIWSTGISTLPVIRDFMEEIGQTKRHVLATDEWLRVQGCKDVFAIGDCSSINQRKIMDDILDIFKAADKNNSGTLTVEEFEEVMDDIILRYPQVEYYLQKNHILDLRVLWNDPEGNERKEIDIEGFKRALSFADSQVKTLPATAQVAAQQGAYLASCFNHVDLCLDHPEGPRRFSGSGHHMFRPFRYKHFGQFAPLGGEQAAAELPGDWVSIGHSTQWLWYSVYASKQVSWRTRYLVVSDWTRKFIFGRDSSRV 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01247 577 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 48 407 - -
Trre8g01247 577 Pfam Pyridine nucleotide-disulphide oxidoreductase 57 377 IPR023753 GO:0016491
Trre8g01247 577 SUPERFAMILY FAD/NAD(P)-binding domain 221 375 IPR036188 -
Trre8g01247 577 SUPERFAMILY EF-hand 336 461 IPR011992 -
Trre8g01247 577 SMART efh_1 382 410 IPR002048 GO:0005509
Trre8g01247 577 ProSitePatterns EF-hand calcium-binding domain. 391 403 IPR018247 -
Trre8g01247 577 Gene3D - 46 404 - -
Trre8g01247 577 Gene3D - 436 577 - -
Trre8g01247 577 ProSiteProfiles EF-hand calcium-binding domain profile. 378 413 IPR002048 GO:0005509
Trre8g01247 577 PANTHER NADH DEHYDROGENASE 50 577 IPR045024 GO:0003954|GO:0006116
Trre8g01247 577 SUPERFAMILY FAD/NAD(P)-binding domain 56 274 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01247 Trre-Chr8 9236123 9241413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01247 5 577 Chloroplast and Mitochondria Gene Families AT4G21490 61.419 0.0 723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01247 K03885 - gmx:100793566 965.681