Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01223 ATGACACAATTCACAGACTCTTTTGCTTTAAAAGCTGTTGTTGAGTTACGCATAGCGGACATAATAGACCGCTATGGTAAGCCACTATCCTTAACTCAAATTGTGCAAAATCTTGACGATGCACCTTCCCCTGATTCCAATCTTCTCTTAAGAGTAATGAGAGTAATGGTTCGTCGAAAGATTTTCAGCGCAGAAAAATCAGAAACCGGAGAGATTCTCTATGGTTTGACACGCGCGTCGAAATGGATCCTACAAGACACAAAAATGACATTGGCACCAATGTTGTTGCTAGAGAATCACCCTTTTCATTTGAACCCTGCTAACTATATAAGTGAAATTGTAAGAGAAGGAACCAAAAATGGCACTGCTTTCTTTAGGTGTCATGGTCATGAACAATTTGAAATGACAGGTTTGGATCCAAAATACAATGAATTGTTTAATCAAGGTATGGTTTGCACTGCTAGGATTGTGTCTAGAGCTGTTATTGCTGGATACAAAGATGGGTTTAATCAAATTCAATCTTTGGTTGATGTTGGTGGTGGTATTGGAGGATCTCTATCTGAGATTGTTAGAGCTTATCCTCACATTCAAGCTATTAACTTTGATTTGCCTCATGTTGTTTCAACTGCACCTAACTTTGATGGTATCACCCATGTTGGAGGAGACATGTTTGTTTCTGTTCCTAGTGCTGATGCTATCTACATGAAGTGGATTCTACACGACTGGAGTGACGACCATTGCATAAAGATATTGAAGAACTGCAGGAAAGCAATACCAGAGAAAACTGGAAAAGTGATCATTGTAGATCATGTATTGGATCCAGAAGGAGCTGAACCATTTACTGACACTGGCATAGCATTTGACATGATGTTGCTTGCACACAATGCTGGTGGTAAAGAAAGGACTGAAGAGAATTGGAGGTACCTATTTAAAGAGACAGGATTCCCTCGTTACAACATCATCAAAATCAATGCTCTTCCATCAATCATTGAAGCATTTCCAATCTAA 1008 0.3919 MTQFTDSFALKAVVELRIADIIDRYGKPLSLTQIVQNLDDAPSPDSNLLLRVMRVMVRRKIFSAEKSETGEILYGLTRASKWILQDTKMTLAPMLLLENHPFHLNPANYISEIVREGTKNGTAFFRCHGHEQFEMTGLDPKYNELFNQGMVCTARIVSRAVIAGYKDGFNQIQSLVDVGGGIGGSLSEIVRAYPHIQAINFDLPHVVSTAPNFDGITHVGGDMFVSVPSADAIYMKWILHDWSDDHCIKILKNCRKAIPEKTGKVIIVDHVLDPEGAEPFTDTGIAFDMMLLAHNAGGKERTEENWRYLFKETGFPRYNIIKINALPSIIEAFPI 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01223 335 FunFam O-methyltransferase family protein 85 333 - -
Trre8g01223 335 Pfam Dimerisation domain 9 57 IPR012967 GO:0046983
Trre8g01223 335 PIRSF O-mtase 1 335 IPR016461 GO:0008168
Trre8g01223 335 Pfam O-methyltransferase domain 109 315 IPR001077 GO:0008171
Trre8g01223 335 CDD AdoMet_MTases 175 272 - -
Trre8g01223 335 Gene3D Vaccinia Virus protein VP39 85 335 IPR029063 -
Trre8g01223 335 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 89 332 IPR029063 -
Trre8g01223 335 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 334 IPR016461 GO:0008168
Trre8g01223 335 PANTHER O-METHYLTRANSFERASE 7 317 IPR016461 GO:0008168
Trre8g01223 335 SUPERFAMILY "Winged helix" DNA-binding domain 2 86 IPR036390 -
Trre8g01223 335 Gene3D - 1 83 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01223 Trre-Chr8 8989965 8991412 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01223 8 321 Monolignol Biosynthesis Gene Families AT5G54160 38.820 5.29e-76 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01223 K22588 - gmx:100800801 613.994