Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01219 ATGAAGAGTGAAAAATTAACCAAAGACACAAAGGGTGTTGATGAGATTACTAAGGTGATTAATGAAATTGAAAGTAAACAATGTGAGATGGAAAAAGGAAAGGAAAAGATGTTTGTTGAAGATGTTTCCATGCAACAAAATCCTCTCAAGAAGATTTGTATCCCTCAACACCAAAACACAAATCAATCATTCTCTCATCAACCTCCTTCATCTAAAATAGTTTTTCCATTTGCTTTTGAAGGTTCTCAATATCCAATATCATTCCTACACAAATCAAAAACAACAAATTTTTTGCCTCCTTTTTCTCCACCTCTTCACCCAACATCACAGCATATTATATCTTTTGAGGCCCAACAAAACATGGGGTATCAACTATCACCACCATTTTCAGCTCCGAATTCTGTTTTATCTCAGCAACGACAACAGATTCAGAATAAGCAGGTTCTTAGGCCCCAAGCGCGGCCTTTGAATGCTGGAAAACTGTATAGAGGAGTGAGACAACGTCATTGGGGAAAATGGGTGGCTGAGATTCGTCTCCCTCGAAATAGAACTCGTCTCTGGCTTGGAACATTTGACAATGCTGAAAATGCTGCCATGGCTTATGATCGCGAGGCTTTTAGGCTAAGAGGAGAAAATGCTAAGCTCAATTTCCCTGAACTCTTCCTTAACAAAGATAAACCACCAACATCATCATCATCATCCACAATAGTTCAAATTTCGTCTACTACTTCGCTACATGAGGGTTCGAGTTCAACATCAACAACGTGCCAGAACTCAAATCAACCAGAATCAGTTCATGACGAACATAGCTTGCCAGCTATCAATGCTTCAAAAACCGGGGAAAGCAATTCACAGCCGGTTTTGGGAGAAATGGCTGGTTGGTTGGAGGCAATTCCAGCAGGTTGGGGTCCAGGTAGTCCTATATGGGACGATTTGGACCCCAACAGTAATCTTCTTTTGCAGTCACAGTTTCCTTTTTTGAATCCAAATCAGCAAGAATTTCATATTATAAGTGATGCTACTCAGAGACAACAAGAAGATAACACAGGACCAGACTCTACCTCTTGA 1068 0.4026 MKSEKLTKDTKGVDEITKVINEIESKQCEMEKGKEKMFVEDVSMQQNPLKKICIPQHQNTNQSFSHQPPSSKIVFPFAFEGSQYPISFLHKSKTTNFLPPFSPPLHPTSQHIISFEAQQNMGYQLSPPFSAPNSVLSQQRQQIQNKQVLRPQARPLNAGKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDNAENAAMAYDREAFRLRGENAKLNFPELFLNKDKPPTSSSSSTIVQISSTTSLHEGSSSTSTTCQNSNQPESVHDEHSLPAINASKTGESNSQPVLGEMAGWLEAIPAGWGPGSPIWDDLDPNSNLLLQSQFPFLNPNQQEFHIISDATQRQQEDNTGPDSTS 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01219 355 CDD AP2 160 220 IPR001471 GO:0003700|GO:0006355
Trre8g01219 355 ProSiteProfiles AP2/ERF domain profile. 161 218 IPR001471 GO:0003700|GO:0006355
Trre8g01219 355 MobiDBLite consensus disorder prediction 223 268 - -
Trre8g01219 355 Pfam AP2 domain 162 210 IPR001471 GO:0003700|GO:0006355
Trre8g01219 355 SMART rav1_2 161 224 IPR001471 GO:0003700|GO:0006355
Trre8g01219 355 PRINTS Ethylene responsive element binding protein signature 162 173 IPR001471 GO:0003700|GO:0006355
Trre8g01219 355 PRINTS Ethylene responsive element binding protein signature 184 200 IPR001471 GO:0003700|GO:0006355
Trre8g01219 355 FunFam Ethylene-responsive transcription factor 2 160 219 - -
Trre8g01219 355 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 36 312 - -
Trre8g01219 355 SUPERFAMILY DNA-binding domain 161 219 IPR016177 GO:0003677
Trre8g01219 355 Gene3D AP2/ERF domain 161 219 IPR036955 GO:0003700|GO:0006355
Trre8g01219 355 MobiDBLite consensus disorder prediction 225 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01219 Trre-Chr8 8969659 8970726 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01219 148 311 AP2-EREBP Transcription Factor Family AT2G20880 53.049 6.08e-51 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre8g01219 AP2 3.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01219 - - tpra:123923279 580.096