Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01213 ATGGGTTCTCTTCAATCCACATTTCTCTACTTGATTTTATTACATTCACTCAACATTGCTGCTTTTAAGGATCAAGAATGGAAGAAAGCCACTGCAACTTATGCCAAAGACACAGAGGGAGGATCTCTCATTACAGAAGGAGCTTGTGGTTATGGTGATCTACACAAGGCTAGTTATGGAAAACACAGTGTTGGATTAAGCACAATTTTGTTCAACAGAGGGAGTACATGTGGGGCTTGTTATGAGATCAGATGTGTTGATCATATTTTGTGGTGTGTCCTTGGAAGCCCTTCTGTAATTGTTACTGCAACTGATTTCTGTCCTCCTAATTATGGTCTCTCAATTGATTATGGTGGCTGGTGTAATTTTCCAAGAGAACATTTTGAGTTGTCACAAGCAGCATTTGCTGAAATTGCCAAGAAGAAAGCTGATATTATTCCAATTCAATATAGAAGAGTGAAGTGTGAAAGAAGTGGTGGCTTAAAATTCACAATGAGTGGAAGTTCTCATTTCTATCAAGTCCTAATAACTAATGTGGGACTAGATGGTGAAGTATTTGCTGTGAAAGTGAAGGGATCAAGAACAGGATGGATACCAATGGCAAGGAATTGGGGAATGAATTGGCATTGCAATGTTAACCTTCAACATCAGCCTTTGTCCTTTGAGGTAACCAGCAGCACTGGAAAAACACTTACATCTTACAATGTAGCACCACAAAATTGGCAATTTGGACAGACATTTCAAGGAAAACAATTTTAG 759 0.3874 MGSLQSTFLYLILLHSLNIAAFKDQEWKKATATYAKDTEGGSLITEGACGYGDLHKASYGKHSVGLSTILFNRGSTCGACYEIRCVDHILWCVLGSPSVIVTATDFCPPNYGLSIDYGGWCNFPREHFELSQAAFAEIAKKKADIIPIQYRRVKCERSGGLKFTMSGSSHFYQVLITNVGLDGEVFAVKVKGSRTGWIPMARNWGMNWHCNVNLQHQPLSFEVTSSTGKTLTSYNVAPQNWQFGQTFQGKQF 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01213 252 Gene3D - 160 252 IPR036749 -
Trre8g01213 252 Pfam Expansin C-terminal domain 162 238 IPR007117 -
Trre8g01213 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 170 249 IPR007117 -
Trre8g01213 252 SMART dpbb_1 63 150 IPR007112 -
Trre8g01213 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 160 IPR007112 -
Trre8g01213 252 PRINTS Expansin/Lol pI family signature 143 159 IPR007118 GO:0005576
Trre8g01213 252 PRINTS Expansin/Lol pI family signature 197 211 IPR007118 GO:0005576
Trre8g01213 252 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Trre8g01213 252 PRINTS Expansin/Lol pI family signature 235 249 IPR007118 GO:0005576
Trre8g01213 252 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Trre8g01213 252 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Trre8g01213 252 SUPERFAMILY Barwin-like endoglucanases 26 178 IPR036908 -
Trre8g01213 252 SUPERFAMILY PHL pollen allergen 157 249 IPR036749 -
Trre8g01213 252 PRINTS Expansin signature 171 192 IPR002963 GO:0009664
Trre8g01213 252 PRINTS Expansin signature 159 171 IPR002963 GO:0009664
Trre8g01213 252 PRINTS Expansin signature 118 135 IPR002963 GO:0009664
Trre8g01213 252 PRINTS Expansin signature 235 251 IPR002963 GO:0009664
Trre8g01213 252 PRINTS Expansin signature 206 227 IPR002963 GO:0009664
Trre8g01213 252 PRINTS Expansin signature 58 72 IPR002963 GO:0009664
Trre8g01213 252 PRINTS Expansin signature 85 96 IPR002963 GO:0009664
Trre8g01213 252 PRINTS Expansin signature 135 148 IPR002963 GO:0009664
Trre8g01213 252 PRINTS Expansin signature 99 109 IPR002963 GO:0009664
Trre8g01213 252 PANTHER EXPANSIN-A15 13 252 IPR002963 GO:0009664
Trre8g01213 252 Gene3D - 13 156 IPR036908 -
Trre8g01213 252 CDD DPBB_EXPA_N 26 155 - -
Trre8g01213 252 Pfam Lytic transglycolase 65 150 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01213 Trre-Chr8 8928567 8929910 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01213 4 252 Expansin Gene Family AT4G38210 64.000 2.02e-119 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01213 - - gmx:100804002 474.167