Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01212 ATGCTGTTTTCTCAAATGGGTTCTCTTCAATCCACATTTCTCTACTTGATTTTATTACATTCACTCAACATTGCTGCTTTTAAGGATCAAGAATGGAAGAAAGCCACTGCAACTTATGCCAAAGACACAGAGGGAGGATCTCTCATTACAGAAGGAGCTTGTGGTTATGGTGATCTACACAAGGCTAGTTATGGAAAACACAGTGTTGGATTAAGCACAATTTTGTTCAACAGAGGGAGTACATGTGGGGCTTGTTATGAGATCAGATGTGTTGATCATATTTTGTGGTGTGTCCTTGGAAGCCCTTCTGTAATTGTTACTGCAACTGATTTCTGTCCTCCTAATTATGGTCTCTCAATTGATTATGGTGGCTGGTGTAATTTTCCAAGAGAACATTTTGAGTTGTCACAAGCAGCATTTGCTGAAATTGCCAAGAAGAAAGCTGATATTATTCCAATTCAATATAGAAGAGTGAAGTGTGAAAGAAGTGGTGGCTTAAAATTCACAATGAGTGGAAGTTCTCATTTCTATCAAGTCCTAATAACTAATGTGGGACTAGATGGTGAAGTATTTGCTGTGAAAGTGAAGGGATCAAGAACAGGATGGATACCAATGGCAAGGAATTGGGGAATGAATTGGCATTGCAATGTTAACCTTCAACATCAGCCTTTGTCCTTTGAGGTAACCAGCAGCACTGGAAAAACACTTACATCTTACAATGTAGCACCACAAAATTGGCAATTTGGACAGACATTTCAAGGAAAACAATTTTAG 774 0.3863 MLFSQMGSLQSTFLYLILLHSLNIAAFKDQEWKKATATYAKDTEGGSLITEGACGYGDLHKASYGKHSVGLSTILFNRGSTCGACYEIRCVDHILWCVLGSPSVIVTATDFCPPNYGLSIDYGGWCNFPREHFELSQAAFAEIAKKKADIIPIQYRRVKCERSGGLKFTMSGSSHFYQVLITNVGLDGEVFAVKVKGSRTGWIPMARNWGMNWHCNVNLQHQPLSFEVTSSTGKTLTSYNVAPQNWQFGQTFQGKQF 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01212 257 SUPERFAMILY PHL pollen allergen 162 254 IPR036749 -
Trre8g01212 257 Gene3D - 165 257 IPR036749 -
Trre8g01212 257 Pfam Lytic transglycolase 70 155 IPR009009 -
Trre8g01212 257 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Trre8g01212 257 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576
Trre8g01212 257 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576
Trre8g01212 257 PRINTS Expansin/Lol pI family signature 240 254 IPR007118 GO:0005576
Trre8g01212 257 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
Trre8g01212 257 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Trre8g01212 257 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 165 IPR007112 -
Trre8g01212 257 CDD DPBB_EXPA_N 31 160 - -
Trre8g01212 257 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 254 IPR007117 -
Trre8g01212 257 Pfam Expansin C-terminal domain 167 243 IPR007117 -
Trre8g01212 257 SUPERFAMILY Barwin-like endoglucanases 31 183 IPR036908 -
Trre8g01212 257 SMART dpbb_1 68 155 IPR007112 -
Trre8g01212 257 Gene3D - 18 161 IPR036908 -
Trre8g01212 257 PRINTS Expansin signature 63 77 IPR002963 GO:0009664
Trre8g01212 257 PRINTS Expansin signature 176 197 IPR002963 GO:0009664
Trre8g01212 257 PRINTS Expansin signature 104 114 IPR002963 GO:0009664
Trre8g01212 257 PRINTS Expansin signature 123 140 IPR002963 GO:0009664
Trre8g01212 257 PRINTS Expansin signature 240 256 IPR002963 GO:0009664
Trre8g01212 257 PRINTS Expansin signature 211 232 IPR002963 GO:0009664
Trre8g01212 257 PRINTS Expansin signature 140 153 IPR002963 GO:0009664
Trre8g01212 257 PRINTS Expansin signature 90 101 IPR002963 GO:0009664
Trre8g01212 257 PRINTS Expansin signature 164 176 IPR002963 GO:0009664
Trre8g01212 257 PANTHER EXPANSIN-A15 16 257 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01212 Trre-Chr8 8928552 8929910 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01212 9 257 Expansin Gene Family AT4G38210 64.000 1.91e-119 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01212 - - gmx:100804002 474.167