Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01206 ATGCAGCTCCAATTTAGTTCCAATCTAAACCTCTTCTTCGTCTTGTCTTTGAAACTCGCACTGCTGCAGACGGCGGTTGGACAACTTCACCACCATACTCTCGACCAACATTGGTATCCCGGAACCGCCACCTGGTACGGTGACCCCGAAGGAGACGGCAGTACCGGTGGAGCGTGTGGGTATGGAACATTGGTGGATGTAAAGCCGTTAAGAGCGAGGGTAGGGGCGGTGGGATCAGTTCTGTTTATGAAAGGGGAAGGGTGTGGAGCCTGTTACAAAGTGAAGTGCTTAGATAATAGCATATGTTCTAGGAGAGCAGTTACGGTTATAATCACAGATGAATGTCCCGGCTGCCCTACTGACCAGACCCACTTTGACCTCAGTGGTGCTGCTTTTGGACATATGGCCATTTCCGGTGAGAACGGTCAACTCAGGAACCGCGGCAAAATACCTGTCATGTACCGAAGAACACCATGTAAATATCCAGGGAAAAAAATTGCCTTCCATGTTAATGAAGGTTCTACACCATTTTGGTTATCACTTCTGGTTGAATTTGAAGATGCTGAGGGAGATATTGGCACTATGCATATACGAGAGAATGGTTCTAGTGAGTGGCTGCAAATGAATCATCTATGGGGTGCAAGTTGGTGCATTATTGGGGGACCTTTAAGGGGACCATTTTCTGTTAAACTAAGCACTTCAACGGGTAGAAGCCTATCAGCTAGAGATGTTGTTCCTTCCAATTGGGTTCCAAAGGCTACTTACACTTCTCGACTTAATTTCTACCCCTAA 792 0.4684 MQLQFSSNLNLFFVLSLKLALLQTAVGQLHHHTLDQHWYPGTATWYGDPEGDGSTGGACGYGTLVDVKPLRARVGAVGSVLFMKGEGCGACYKVKCLDNSICSRRAVTVIITDECPGCPTDQTHFDLSGAAFGHMAISGENGQLRNRGKIPVMYRRTPCKYPGKKIAFHVNEGSTPFWLSLLVEFEDAEGDIGTMHIRENGSSEWLQMNHLWGASWCIIGGPLRGPFSVKLSTSTGRSLSARDVVPSNWVPKATYTSRLNFYP 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01206 263 Pfam Expansin C-terminal domain 166 246 IPR007117 -
Trre8g01206 263 SUPERFAMILY Barwin-like endoglucanases 29 163 IPR036908 -
Trre8g01206 263 FunFam Beta-expansin 3 161 262 - -
Trre8g01206 263 PRINTS Expansin/Lol pI family signature 205 219 IPR007118 GO:0005576
Trre8g01206 263 PRINTS Expansin/Lol pI family signature 37 52 IPR007118 GO:0005576
Trre8g01206 263 PRINTS Expansin/Lol pI family signature 55 73 IPR007118 GO:0005576
Trre8g01206 263 PRINTS Expansin/Lol pI family signature 78 96 IPR007118 GO:0005576
Trre8g01206 263 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576
Trre8g01206 263 PRINTS Expansin/Lol pI family signature 243 257 IPR007118 GO:0005576
Trre8g01206 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 177 257 IPR007117 -
Trre8g01206 263 SUPERFAMILY PHL pollen allergen 164 257 IPR036749 -
Trre8g01206 263 PRINTS Major pollen allergen Lol pI signature 184 199 IPR005795 GO:0005576|GO:0019953
Trre8g01206 263 PRINTS Major pollen allergen Lol pI signature 114 129 IPR005795 GO:0005576|GO:0019953
Trre8g01206 263 PRINTS Major pollen allergen Lol pI signature 168 183 IPR005795 GO:0005576|GO:0019953
Trre8g01206 263 PRINTS Major pollen allergen Lol pI signature 136 151 IPR005795 GO:0005576|GO:0019953
Trre8g01206 263 PRINTS Major pollen allergen Lol pI signature 233 250 IPR005795 GO:0005576|GO:0019953
Trre8g01206 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 56 164 IPR007112 -
Trre8g01206 263 SMART dpbb_1 74 154 IPR007112 -
Trre8g01206 263 Gene3D - 160 258 IPR036749 -
Trre8g01206 263 Pfam Lytic transglycolase 79 154 IPR009009 -
Trre8g01206 263 CDD DPBB_EXPB_N 38 159 - -
Trre8g01206 263 PANTHER EXPANSIN-B3 21 261 - -
Trre8g01206 263 FunFam Expansin B3 24 160 - -
Trre8g01206 263 Gene3D - 23 159 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01206 Trre-Chr8 8891054 8893894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01206 13 218 Expansin Gene Family AT4G28250 65.049 4.54e-94 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01206 K20628 - gmx:100804525 472.626