Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01199 ATGGCCTTAGATCAGTACATGAACAACACCGCATCTCAAATCGACTCTTTTGAAGACAAACCATCTTTGAAAAAATGGAAAACCTCGACAGATATGATTTCAGATTCTGATAGAAATTCATCTGGTGGCTTCGACTGCAACATCTGCCTGGATTGTGTGCAAGATCCAGTAGTAACTTTTTGCGGTCATCTTTACTGTTGGCCTTGCATTTACAAATGGCTTCATGTACAAAGTAGTATCACTTCCGAAAACGAAGAGAAGCCGAAGCCACAATGTCCGGTATGCAAATCAGAACTCTCTCAATCTTCCCTAGTTCCATTATACGGCCGTGGCCAATCCACAACAATCTCCGAAGGCAAGACTCAAACTCATCAAGTAGGAATTGTTGTACCTCGAAGACCTACGGGTCCTAGATCATATAATTCCACAACTATTTCCCAACCTACTTATCAAAGTTATCATCATCCTCAACAATTCAACTCAATTCCTAGCAGTTACCCCTCACCGATGTTTAGTACAAGTGGTTCGGCACTAGACAATACATACGGAATCTTCGGTGAAATGATATATGCAAGAGTGTTTGGTAACCAGATGGAAAACATGTATACATATCCTAATTCATATAGTTTTATAGGGAATAATAATCCAAGGGTTAGAAGACATTTGATGCAAGTTGATAGATCACTCAGCAGAATATGTTTTTTCCTCCTTTGCTGCTTAGTTTTGTGTCTTCTCTTATTCTAA 744 0.3938 MALDQYMNNTASQIDSFEDKPSLKKWKTSTDMISDSDRNSSGGFDCNICLDCVQDPVVTFCGHLYCWPCIYKWLHVQSSITSENEEKPKPQCPVCKSELSQSSLVPLYGRGQSTTISEGKTQTHQVGIVVPRRPTGPRSYNSTTISQPTYQSYHHPQQFNSIPSSYPSPMFSTSGSALDNTYGIFGEMIYARVFGNQMENMYTYPNSYSFIGNNNPRVRRHLMQVDRSLSRICFFLLCCLVLCLLLF 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01199 247 SUPERFAMILY RING/U-box 45 101 - -
Trre8g01199 247 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 11 244 IPR045103 GO:0005783|GO:0006511|GO:0061630
Trre8g01199 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 113 IPR013083 -
Trre8g01199 247 ProSiteProfiles Zinc finger RING-type profile. 46 96 IPR001841 -
Trre8g01199 247 ProSitePatterns Zinc finger RING-type signature. 61 70 IPR017907 -
Trre8g01199 247 Pfam Zinc finger, C3HC4 type (RING finger) 46 95 IPR018957 GO:0046872
Trre8g01199 247 CDD RING-HC_AtRMA-like 44 97 - -
Trre8g01199 247 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 29 109 - -
Trre8g01199 247 SMART ring_2 46 95 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01199 Trre-Chr8 8848338 8849081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01199 39 247 C3H Transcription Factor Family AT4G28270 39.437 1.56e-46 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01199 K10666 - gmx:100785491 328.561