Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01195 ATGAATAGCAGTAACGGAGGAGGGATGATGGGTTTCAGTAAATCAGCAGCAGCAGCATCATCATCACCTTTCACAGTGTCTCAGTGGCAGGAACTTGAACATCAAGCTTTGATCTTTAAATATATGGTTGCTGGTCTTCCTGTTCCACCTGATCTTGTCCTTCCCATTCAGACCACTTCCTTCCACTCCAACAATTTCTTTCATCATCCTATTCCTACCTTGAGTTATTGTTCCTTCTATGGGAAGAAGGTGGACCCGGAGCCAGGAAGATGTAGGAGGACTGATGGAAAAAAATGGAGGTGCTCGAAGGAAGCATACCCAGACTCCAAGTACTGTGAGCGCCACATGCACCGTGGCCGCAACCGTTCAAGAAAGCCTGTGGAATCACCAACTATGGCACAGTCGTCATCCACTGTGACATCTCTGACTGTCGCTAGTGGCGGCAGCAGAGCTGGAAACTTCCAGAATCTTCCCACAACAAATGCCTTTGGTAGTCCTCAAAATACTACTGCTTGTGGAACTGACCGTGCCGATTATCATCTTGATACCATTCCGTATGGGATTCCAAGTAAAGAATACAGGTATCTTCAAGGTCTTAAATCTGAGGGTGGAGAACATAGCTTCTTTGCCGAAGGTTCAGGAGGAGGCAACAAGGGTCTCCAAATGGAGTCGCAGCTGGAAAATGCATGGCCTTTGATGTCAACCAGAGTTTCCTCTTATTCTGCTTCAAAATCGAGTAATAATTCCATGTTGCAAAGTGGTTATCCCCAGCATTCATTTTTATCTAGTGAATATGGATCTGGTGAAGCTGTGAAGGAAGAAGGCCAGCCTCTTCGACCCTTTTTCAACGAATGGCCTAAGAGCAGGGAGTCATGGTCTGGTTTAGAAAATGAGAGATCCAACCAAACAGCCTTCTCCACAACTCAACTCTCAATATCAATACCTATGTCATCTTCTGACTTCTCCACCACAAGCTCTCAGTCGCCACACGATAACTAG 999 0.4595 MNSSNGGGMMGFSKSAAAASSSPFTVSQWQELEHQALIFKYMVAGLPVPPDLVLPIQTTSFHSNNFFHHPIPTLSYCSFYGKKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVESPTMAQSSSTVTSLTVASGGSRAGNFQNLPTTNAFGSPQNTTACGTDRADYHLDTIPYGIPSKEYRYLQGLKSEGGEHSFFAEGSGGGNKGLQMESQLENAWPLMSTRVSSYSASKSSNNSMLQSGYPQHSFLSSEYGSGEAVKEEGQPLRPFFNEWPKSRESWSGLENERSNQTAFSTTQLSISIPMSSSDFSTTSSQSPHDN 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01195 332 MobiDBLite consensus disorder prediction 127 170 - -
Trre8g01195 332 Pfam QLQ 23 57 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre8g01195 332 ProSiteProfiles WRC domain profile. 85 129 IPR014977 -
Trre8g01195 332 MobiDBLite consensus disorder prediction 280 332 - -
Trre8g01195 332 Pfam WRC 86 128 IPR014977 -
Trre8g01195 332 ProSiteProfiles QLQ domain profile. 23 58 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre8g01195 332 SMART QLQ_2 22 58 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre8g01195 332 MobiDBLite consensus disorder prediction 295 332 - -
Trre8g01195 332 MobiDBLite consensus disorder prediction 116 170 - -
Trre8g01195 332 PANTHER GROWTH-REGULATING FACTOR 5 15 320 IPR031137 GO:0005634|GO:0006351|GO:0032502
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01195 Trre-Chr8 8806914 8810881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01195 9 128 GRF Transcription Factor Family AT3G13960 58.871 4.01e-44 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Trre8g01195 WRC 1.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01195 - - gmx:100787226 465.692