Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01193 ATGATTCAAAACGCTGATATGAGACTTGAATCAGGGACTTGTAACGTGTGCTCAGATCCTTGTTCATCTTGCATGCATTTTAATCAAGCTACTATGGGGTCAAAGGCTGAAGAATACTCTGATGAAAACTGTCGCTTAGTGGAGGACAAACGTTATTCTACAGACGAGGGTGATGAATCTTATGTTAGGAGCAGAACTTGTGAAAGATTGAAGCATTCCGGCAGTGAAACCAGTAACATGCCTAGTATTTTCTCCAGTCAAGATTCTCTATCTGAAAATACCAAGAGTAAACAGGCCTTTTCAGAAAAGTGTCAGGATTCTAAGTGCGTAGAAGGTCTTGATGATAGCATTAATTGTATCAGTAGACCCGATAATACTAATTTAGTGAGTTGTAGTAATCAAATAAATTCAGACAAAATAAATATATCTTCTATTTCAGCTTCAGTTAGTCTCGTTGGGGAACAAGGGTCTGGAATTGCGCAATCTGTTGATATCTCTGGTTCATCTGAGATTCTCTCTAAATATGTGGACGTTCCAGAAAAATTGTCAGAATGCTGTACAGAAAATGTTGATTCATCATTGACCAAAGAGAGAGAACCTATTATTATTTCTGGTGAAAAATCTCTTCCAGATAAGGATGAACTTGTTAGCGATACAGCCAAAGTGTCACAAAAAATGTATCCAAAGTCAGAAGCTGATGCTGACAATGTTGTTAGTGTTGCTGAAGATGGGTATCATAAACGTTCAGCCCATGATGGACTGCATGAGAAGGCTGAGGAACGGATTAACTCGCTTGGGATATCTGTACCTCAACCAGAAGATGAGAGTGATGAGTCAGATGTTATTGAGCATGATGTAAAAGTATGTGACATCTGTGGAGATTCTGGTCAAGAGAAACTACTTGCCATATGTAGTAGGTGCAGTGATGGTGCAGAGCACACATACTGCATGCGGGAAAAGCTTCAAGAGATGCCTGAAGGGGATTGGTTTTGTGAGGAATGTCAATGTGCGGAGGAGACTACCAATCAAAGATTGGGAAAAAATAGTCATAAAGTTGGTTCCAGTTCTCAAATATCTGGCAAAAGGTCCTCTGAAATCATGGAAGTAGCTGAAGCAGCAAAGAGGCGAGCCCTCGAATCAAGCACAGGATTACCGAAGGCATTGGCATCAAGCCCCAGGAGATTAGTTCCACTGTCACGTGAGTCTTCATTCAAGAACTTAGACAATGGAAAGGTGAAACCTGGTCAAACTTCAAGGAGAATGGGTTCATTGTTGAAGTGTAGTTCATTCAACAACTTCAATTCCAAATCAAGAGTCAAACTTGATGATGATGTTAGGCAAAAGCAGAAAGGGGGTGGTGAACATGTTTCTAAGAACATGCAGACAACTGGTGGGACAGTAGGAAAATCAATGTCATTCAAATCGTCAAATTTGGGCCGTGATACTGTATCAAAAGTTAAAATGCTTTCTTCAAAGTCTGGAACTTCTCAGAATTTGAAAGGATCAAGCCTTGCAAAAGAATCAGCTGTATTTGACAGGAAATCTCTGTCTAGGATTGATCGGCCTGTCATCTCCACATCTAAGCGTGATCAGAAGTTTACACCTCATGGTGAAACTGTTCAACCTTTAGTACCTAACTGCAACCAGGAGTTTAAAGTTAACCATGATGGGAAATCAAGTTCATTATCAAAGCCTGTGAATAGTATAAGCAACAAAATCCCAGAACCTCAAGTTATTTCAGAGAGAACGTCAACCAGTGGGTATGATACTCAACAGGATGGGCTGCTTCGATTACGAGAAACAACAAATCAGGTTGACAAAACAAAAGATAGTTATACTCGTCGTGTGAGGTCGGGTACTAATGCTTCAAAATCTCCGTTCTGTCGGAAATGTAAAGATTATGGCCATGCTACAGAATGTTGCACAGTTGGTGGAACACATGAATTTGGTGCTGACAGACCGGTTACTGCCACAAGTAATTTAAAAGAGTTGCATAAAGGTAGTAGACTGAAAGCTGCAATCCAGGCAGCTTTGCTTAAAAGGCCTGAAATACACAAGAAGAAAGATCTACATGATCAGTTTGCTACATCAGACACAGTCTTGAAATGCAAAATCAGTTCTCAAAACCAAGTGGAGGTCTCTGCTTCTAACACACTGAAAAATAGTATTTCTGCTGAAGAAACCAATGTGAGGCATGGAAGGCAGAATTCTACATTTGAAACGTCCAAATGTTTGTCTGCCAATGATTTGAATCACATTAAAACTGAATTGTGCTCTCAACTGAAGAATTCAGATTCTATTAGTCCTTCTTCTGAAAAGCCTGCAGTGAGAGACTTGCCTAATCTTTTTTTGGCAATCTCAAGTGTTACTTCAGAGATGTCAGCCGTTCCAGAATACAAATACATATGGCAGGGTGTCTTTGAAGTGAGTAGAAGTGGAAAGTCTCCCGGCCTTTATACCGGAATTCAAGCACATTTATCCTCATGTGCTTCCCCAAAGGTTCTTGATGCAGTGAACAAGTTTTTACCCGAAATTTCCCTGCATGAAGTTTCTCGCTTGAGCACCTGGCCTTCACATTTTCATCAATGTGGTGCTAAAGAAGATAATATTGCTCTTTACTTCTTTGCCAAAGACATTGAAAGTTATGAGAGACACTACAAGAGTCTATTGGATCGCATGATTAGACATGATTTAGCACTCAAAGGGTTTATTGATGGTGTCGAACTTCTCATATTTGCTTCCAATCAGCTTCCTGAAAATTCACAGCGTTGGAATATGTTATTTTTCTTATGGGGAATATTTAGAGGGAGGAAGATTAATCCTTCAGATTCTGCAAAAAATATTGTTTTACCAAGTTTGAACGTGGCAGTGCCAAATGAGAAGGATTTTCCGACTGCTGTCATGACCTTGTCTGATACTCGCTGTTCACCAGTGCGCATCGATGAAGAATCCATAGCTTGTGGTAAAGCTTGCAATGAACTTCCAGCCACTTCCATTGACAAAGGTCATATTGTGCCAAGTAAGGATTTTGATACAAAAGACACTATTTTTGACCAGACACATTTGGGTTCACAAGTAAACTTTGATAGGCAAAACAACACCAAGTCTCCGCCAAGGATTTCAACAAACGTTATACAACCATGTCGAGAAATGAATACCTTTGATTTGTCCCTGAAAGAGAAAGGTAGTTTGTCAGAGCATGGACTGCACAGAGAGTCTAAATCTCCCGAAGAGGCGGGAACAATTGTAAGGGCTGTGATTGTGGAAACAAAACCTAATTATGGTATTTCTGTCAAGCAAGAGAACCCCATGTCTTCAAGGATTCCTTATCTTGACAATCAAGAGACACTCACTGTAAACAGCACCCTGAAAGATAAAATTTCGGAGAGAACAGACAATGATGAAAATCAACGAAGGCCTAAAAGGAAAGAGAGAGAAGATGATCTCAATATTAATGTGGAAGCAACATTTCAGGGAGATCTGGCCATAGAAGCAGCAAACTGTCGGCTACCTATTGATATAAAAGTTGAGCATATAGACCATTCAAACACAGTTATGGAGGCTCCTGCAGCTAGTTGTCAGGAAATGCCTCGGACTAAGATGAATGAAAAGTTGGAATATACAGACAGTTCTAGCAAGCTGCAGTCAGGTTTCAGTGGAATCTATGGGTGTTACAATTCTGTAGCTAGGGATTCTTTTACTGGGAGTTCTGCATCACTTGCAAATGATTTTGGTTCCTCTTCTTCAGTTGAAGATAAAGGATGCAAAGAATCTTGTGATGAGAAAATCATTCATGAGGACCTTGGAACGAAGGAAAAAACCTTCTTCCCTATTGATACACACAATACAACTGACTCGCGATTGGTGCTGAATAACATGTCAATGAAAGGGACTCGTGAGTGCGGTGAGCAATTTGAAGTTGGGATACCGAGTCTCGAGCTTGCTTTGGGGGGTGAAATGAAACAGTCAAAGAACGGTACACTTCCTTTCCTTGCTGAGAAAGCTGACAAGAAAAATAACCAGGAAAAGACTCCAGATTGTTTGGAAGCTGAGCAACAGGATGATGACAGTGTTGCCGCATCTCTTTCCCTATCTCTATCTTTCCCATCTTCAAACAAGGAAACCACAATACCTGCTTCAAAAGATGAGCATCGCATGAATTCTTCATTGCTCCTTTTTGGGAAATTCACTGGCAAATAA 4200 0.4033 MIQNADMRLESGTCNVCSDPCSSCMHFNQATMGSKAEEYSDENCRLVEDKRYSTDEGDESYVRSRTCERLKHSGSETSNMPSIFSSQDSLSENTKSKQAFSEKCQDSKCVEGLDDSINCISRPDNTNLVSCSNQINSDKINISSISASVSLVGEQGSGIAQSVDISGSSEILSKYVDVPEKLSECCTENVDSSLTKEREPIIISGEKSLPDKDELVSDTAKVSQKMYPKSEADADNVVSVAEDGYHKRSAHDGLHEKAEERINSLGISVPQPEDESDESDVIEHDVKVCDICGDSGQEKLLAICSRCSDGAEHTYCMREKLQEMPEGDWFCEECQCAEETTNQRLGKNSHKVGSSSQISGKRSSEIMEVAEAAKRRALESSTGLPKALASSPRRLVPLSRESSFKNLDNGKVKPGQTSRRMGSLLKCSSFNNFNSKSRVKLDDDVRQKQKGGGEHVSKNMQTTGGTVGKSMSFKSSNLGRDTVSKVKMLSSKSGTSQNLKGSSLAKESAVFDRKSLSRIDRPVISTSKRDQKFTPHGETVQPLVPNCNQEFKVNHDGKSSSLSKPVNSISNKIPEPQVISERTSTSGYDTQQDGLLRLRETTNQVDKTKDSYTRRVRSGTNASKSPFCRKCKDYGHATECCTVGGTHEFGADRPVTATSNLKELHKGSRLKAAIQAALLKRPEIHKKKDLHDQFATSDTVLKCKISSQNQVEVSASNTLKNSISAEETNVRHGRQNSTFETSKCLSANDLNHIKTELCSQLKNSDSISPSSEKPAVRDLPNLFLAISSVTSEMSAVPEYKYIWQGVFEVSRSGKSPGLYTGIQAHLSSCASPKVLDAVNKFLPEISLHEVSRLSTWPSHFHQCGAKEDNIALYFFAKDIESYERHYKSLLDRMIRHDLALKGFIDGVELLIFASNQLPENSQRWNMLFFLWGIFRGRKINPSDSAKNIVLPSLNVAVPNEKDFPTAVMTLSDTRCSPVRIDEESIACGKACNELPATSIDKGHIVPSKDFDTKDTIFDQTHLGSQVNFDRQNNTKSPPRISTNVIQPCREMNTFDLSLKEKGSLSEHGLHRESKSPEEAGTIVRAVIVETKPNYGISVKQENPMSSRIPYLDNQETLTVNSTLKDKISERTDNDENQRRPKRKEREDDLNINVEATFQGDLAIEAANCRLPIDIKVEHIDHSNTVMEAPAASCQEMPRTKMNEKLEYTDSSSKLQSGFSGIYGCYNSVARDSFTGSSASLANDFGSSSSVEDKGCKESCDEKIIHEDLGTKEKTFFPIDTHNTTDSRLVLNNMSMKGTRECGEQFEVGIPSLELALGGEMKQSKNGTLPFLAEKADKKNNQEKTPDCLEAEQQDDDSVAASLSLSLSFPSSNKETTIPASKDEHRMNSSLLLFGKFTGK 1399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01193 1399 SMART PHD_3 288 335 IPR001965 -
Trre8g01193 1399 PANTHER - 286 962 - -
Trre8g01193 1399 MobiDBLite consensus disorder prediction 377 421 - -
Trre8g01193 1399 MobiDBLite consensus disorder prediction 1334 1384 - -
Trre8g01193 1399 MobiDBLite consensus disorder prediction 438 453 - -
Trre8g01193 1399 MobiDBLite consensus disorder prediction 454 479 - -
Trre8g01193 1399 MobiDBLite consensus disorder prediction 1125 1147 - -
Trre8g01193 1399 SUPERFAMILY FYVE/PHD zinc finger 276 339 IPR011011 -
Trre8g01193 1399 MobiDBLite consensus disorder prediction 1356 1376 - -
Trre8g01193 1399 MobiDBLite consensus disorder prediction 1121 1147 - -
Trre8g01193 1399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 222 349 IPR013083 -
Trre8g01193 1399 ProSiteProfiles Zinc finger PHD-type profile. 286 337 IPR019787 -
Trre8g01193 1399 MobiDBLite consensus disorder prediction 1335 1350 - -
Trre8g01193 1399 MobiDBLite consensus disorder prediction 438 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01193 Trre-Chr8 8781803 8788068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01193 211 345 C2H2 Transcription Factor Family AT3G01460 27.206 1.31e-06 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01193 - - mtr:25479298 2112.81