Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01192 ATGTCTAGAGCCAAACATGTTATTACATGCAAAGCTGCGGTATGCTGGGGGGCAGGAGAGCCAGTGAAATTGGAAGAGATACAAGTAGATCCACCAAAGGCAACAGAAGTACGAGTTAAGATGTTGTGTTCCAGTATCTGCCACACAGATATCTCAAGCCTTAAAGGATTCCCACATAATCAATTTCCTCTAGCACTTGGACATGAAGGAATTGGTGTTGTTGAGAGTGTTGGTGATGAAGTAACAAATCTAAAGGAAGGTGATTTTATACTTCCAACATACATAGGAGAATGTGGAGAATGTGAGAATTGTGTTTCAGGAAAAACCAATTTGTGTTTAACACATCCTGTGAGATTGACTGGTCTAATGCCAGATAACACTTCAAGGTTGTCTGTACGAGGTCAAAAACTATACCATGTTTTGAGTTGTGCTACATGGTCAGAGTATGTGGTTGTTGATATCAACTACCTTGTCAAAGTTGATCCAAACATTGATCTAGCTTATGCTAGTTTCATCTCATGTGGGTTTTCAACTGGTTATGGAGCTTCTTGGAAGGAAGCTAATATTCAAAGTGGTTCAACTGTTGCTGTTTTTGGTCTTGGTGCTGTTGGATTAGGGGCTATAAGTGGAGCCAAGATGATGGGAGCAAGTCAAATAATTGGAGTTGACAAAAATGTGATGAAGAAAGAAAAAGGAGAAGCTTTTGGAATGACTCACTTTATAAATTCTAATGTTCCTGATAAATCTTGTTCAGATTTGGTTAAAGAGTTAACTGGAAGGGGTGTAGATTATTGCATTGAATGCACTGGAGTTGCACCTTTGCTTACTGAATCTTTGGAAGCCACAAAAGTGGGAACAGGTAAAGCAATTGCAGTTGGTATGGGAGTAGAACTTGTTATACCATTTGGAATTCTTGGCATTCAGTTTGGTAGAACCTTAAAAGGTTCTGTTCTTGGAGGTATAAAAACCAAAACAGATATTGCCACCATAGTGAACAAATGTCAAAAAGAGGAATTCCCTCTTCAAGAACTTTACACCCATGAGGTCCCTTTGGTAGATATAGGCAAATCATTTGAGTTGTTGAAACAACCAAATTGTGTGAAAGTTGTTATCAAGATGTGA 1122 0.3868 MSRAKHVITCKAAVCWGAGEPVKLEEIQVDPPKATEVRVKMLCSSICHTDISSLKGFPHNQFPLALGHEGIGVVESVGDEVTNLKEGDFILPTYIGECGECENCVSGKTNLCLTHPVRLTGLMPDNTSRLSVRGQKLYHVLSCATWSEYVVVDINYLVKVDPNIDLAYASFISCGFSTGYGASWKEANIQSGSTVAVFGLGAVGLGAISGAKMMGASQIIGVDKNVMKKEKGEAFGMTHFINSNVPDKSCSDLVKELTGRGVDYCIECTGVAPLLTESLEATKVGTGKAIAVGMGVELVIPFGILGIQFGRTLKGSVLGGIKTKTDIATIVNKCQKEEFPLQELYTHEVPLVDIGKSFELLKQPNCVKVVIKM 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01192 373 CDD liver_alcohol_DH_like 8 372 - -
Trre8g01192 373 Gene3D - 13 368 - -
Trre8g01192 373 FunFam alcohol dehydrogenase 1-like isoform X1 18 178 - -
Trre8g01192 373 Gene3D - 179 316 - -
Trre8g01192 373 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 164 334 IPR036291 -
Trre8g01192 373 PANTHER ALCOHOL DEHYDROGENASE 6 365 - -
Trre8g01192 373 Pfam Zinc-binding dehydrogenase 202 321 IPR013149 -
Trre8g01192 373 FunFam S-(hydroxymethyl)glutathione dehydrogenase 179 316 - -
Trre8g01192 373 Pfam Alcohol dehydrogenase GroES-like domain 35 160 IPR013154 -
Trre8g01192 373 SUPERFAMILY GroES-like 5 189 IPR011032 -
Trre8g01192 373 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 67 81 IPR002328 GO:0008270|GO:0016491
Trre8g01192 373 SMART PKS_ER_names_mod 17 371 IPR020843 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01192 Trre-Chr8 8776916 8779748 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01192 36 174 Monolignol Biosynthesis Gene Families AT4G37970 31.206 3.08e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01192 K00121 - gmx:100798341 590.112