Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01168 ATGGCTTCCACAGTGACTTCACGTTTTCATGAATCCTTCACCAAAAATGCACTTCGCTCTTATCTTGCAGAATTTATTTCAACTTTTTTCTATGTTCTTATTGTTATTGGCTCTGGAATGTCCTCAAGGAAGTTGATGCCTGATGCATCACTGAACCCAACAAGTTTGGTTGTGGGTGCTATTGCAAATGCTTTTGCACTTTCATCTGTTTTGTACATTGCATGGGAAATTTCAGGTGGACATGTCAACCCTGCTGTGACCTTTGCAATGGCAGTTGGAGGCCATATTAGTGTCCCAACTGCTCTCTTTTATTGGGTTGCTCAACTTATTGCCTCTGTTATTGCCTGCCTTTTCCTCAAAGTTATTGTTGTGGGAATGCATGTGCCAACATACACAATTGCAGAAGAGATGACAGGATTTGGAGCATCAGTATTAGAGGGTACCCTAACATTTGTATTAGTGTACACAATATATTCTGCAAGGGACACTAGGCGTGGACAAGTAGGTTCAACAGGAACACTTATAATAGGTTTAATAACAGGAGCAAGTGTTTTAGCAGCAGGTCCATTCTCTGGTGGTTCAATGAACCCTGCATGTGCTTTTGGCTCTGCTTCCATTGCTGGAACATTCAGAAATCAAGCTGTCTATTGGGTTGGTCCTTTGGTTGGTGCTGCTGTTGCTGGTCTTCTTTATGATAATGTGTTGTTCCCTTCTCAGAATTCAGATTCAATTAGAGGGGTTTCAGATGGAAATGTTAGGGTGTAA 765 0.4157 MASTVTSRFHESFTKNALRSYLAEFISTFFYVLIVIGSGMSSRKLMPDASLNPTSLVVGAIANAFALSSVLYIAWEISGGHVNPAVTFAMAVGGHISVPTALFYWVAQLIASVIACLFLKVIVVGMHVPTYTIAEEMTGFGASVLEGTLTFVLVYTIYSARDTRRGQVGSTGTLIIGLITGASVLAAGPFSGGSMNPACAFGSASIAGTFRNQAVYWVGPLVGAAVAGLLYDNVLFPSQNSDSIRGVSDGNVRV 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01168 254 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Trre8g01168 254 PRINTS Major intrinsic protein family signature 214 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g01168 254 PRINTS Major intrinsic protein family signature 145 163 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g01168 254 PRINTS Major intrinsic protein family signature 177 199 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g01168 254 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g01168 254 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g01168 254 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g01168 254 SUPERFAMILY Aquaporin-like 9 241 IPR023271 -
Trre8g01168 254 Pfam Major intrinsic protein 15 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g01168 254 PANTHER AQUAPORIN-8 8 237 IPR034294 -
Trre8g01168 254 FunFam Probable aquaporin TIP5-1 3 243 - -
Trre8g01168 254 Gene3D Glycerol uptake facilitator protein. 2 247 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01168 Trre-Chr8 8568850 8571131 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01168 3 251 Major Intrinsic Protein MIP AT3G47440 62.651 2.03e-109 314
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01168 K09873 - gmx:100801448 422.935