Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01163 ATGGCAAAGAAGAAGAAGAGTTGGTTTAATCTAGTGAAGAGACTTTTCATATGGGATACACATTCAACACAAGAGAAGAAGGAGAAAAGAAGGAAATGGATATTTGGAAAGTTGAAGACAAAGAAGTTAGCTTCAATTACAGCTCCACCAACAACATTAAAAGAAACAGAACAAAATGAAGCAGAGGTGAAAAAAACCAAGCATTCTGAATCTGCAGTTACTGCTACTGAAGTTGTTATTCTTAGTGGTGTTTCACATGATAACTCAGAAGAATCTGAACCTGTGAAAACTGTGAATGGTGTTTCTCAATCAATATATAAGTGCCAGAAAGTGATTCAAGAATTTGCAGCTATCAAAATTCAAACTGCTTTTAGGGGTTACCTAGCAAAGAAGGCTTTGAGGGCATTGAAGGGAATAGTGAAACTTCAAGCTATAATTCGCGGAAGAGCGGTGAGACGCCAAGCTATGAGTACTCTTAAGAGCTTACAATCCATTGTAAGTATTCAATCAAAGATATGTGCAAGGAGACTGCAAATGGTTGAAGGAAGATGGGAGGATTGTGTTGAAGATGAAGACATGCATTATTCTAAAGACAAGATAATTAGGATGGACTCAAACAGTGAAAGAAAGTGGGATGACAGCACTTTATTGAAGGAAGAGGTAGATGCTTCTTGCATGATCAAGAAAGAAGCCATTATTAAGAGAGAAAGAATAAAAGAATACACATTTAATCATAGAAGGTCAGCAGAGTCAGAAAGAAGTAAAGTGAATGGAAGATGGAGGTACTGGCTGGAGCAATGGGTAGATACACAACTTTCAAAAAGCAAAGAACTTGAAGATTTAGACTCAGTTTTCAGCTCAAATTCTAGAACTGGTGAAGAATTCGGAACAAGACAACTTAAGCTGAGAAATACTACTACTCAGAGACAATATCAAAATCCACTTGAAGGATTGGAATCACCAATACTTCTATCAAGAAAATCATTCCCTCACAAGAGACAATGTTCAATAGAAGATCAATCATTTTCAAGCTCTCCTGCAACTCCGGCATACATGGCTGCTACTGAATCAGCAAAAGCAAAAGCAAGATCAACAAGTTCACCAAAAGCAAGATCATGGAATTATGACATGAACTCAGATAGCTATTTATCACCTTGCAAGAAAAAGTTATCAATTGTTTCATCTGTTAACAGTGATGTGCTTAATGGTAGAATGGGAAAGCTTAGTGGTAGTAATCAACAAAGATCACCAAGTCTTAAGGGTATTTCAGTGCCTATAAAATCAAGCAGGACCATAATAAAGGATCTTAGCATTAATTCAGATGGTTCATTGCCTAATTGGGATAGACAAAGTTCATTCAGATGA 1365 0.367 MAKKKKSWFNLVKRLFIWDTHSTQEKKEKRRKWIFGKLKTKKLASITAPPTTLKETEQNEAEVKKTKHSESAVTATEVVILSGVSHDNSEESEPVKTVNGVSQSIYKCQKVIQEFAAIKIQTAFRGYLAKKALRALKGIVKLQAIIRGRAVRRQAMSTLKSLQSIVSIQSKICARRLQMVEGRWEDCVEDEDMHYSKDKIIRMDSNSERKWDDSTLLKEEVDASCMIKKEAIIKRERIKEYTFNHRRSAESERSKVNGRWRYWLEQWVDTQLSKSKELEDLDSVFSSNSRTGEEFGTRQLKLRNTTTQRQYQNPLEGLESPILLSRKSFPHKRQCSIEDQSFSSSPATPAYMAATESAKAKARSTSSPKARSWNYDMNSDSYLSPCKKKLSIVSSVNSDVLNGRMGKLSGSNQQRSPSLKGISVPIKSSRTIIKDLSINSDGSLPNWDRQSSFR 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01163 454 Pfam IQ calmodulin-binding motif 116 134 IPR000048 GO:0005515
Trre8g01163 454 Pfam Protein of unknown function (DUF4005) 337 403 IPR025064 -
Trre8g01163 454 ProSiteProfiles IQ motif profile. 137 164 IPR000048 GO:0005515
Trre8g01163 454 PANTHER IQ-DOMAIN 5-RELATED 1 394 - -
Trre8g01163 454 ProSiteProfiles IQ motif profile. 113 141 IPR000048 GO:0005515
Trre8g01163 454 MobiDBLite consensus disorder prediction 404 423 - -
Trre8g01163 454 Gene3D - 113 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01163 Trre-Chr8 8516574 8519744 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01163 4 454 IQD Protein Family AT5G13460 46.934 1.56e-111 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01163 - - gmx:100800192 650.588