Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01153 ATGACTGGGAGGAAGGTTAAACTTGCCTTTATCTCCAATGATTCAGCAAGGAAGGCAAGCTACAGGAAAAGAAAGAAGAGTATCATCAAGAAGGTGAGAGAACTCGCCATTCTTTGTGATGTTCCAGTCTGTGCTATAATTTCAAACCCTGTTGATTCTAAAACAGTGGTGTGGCCGGATCGAGAGAGAGCCAACCAGGTGATTGAAAGATATCGTAATTCTACGAAGAAAGATGAGACAAAAAATATGAACCAAGAGAGCTTCCTTTTGCAGAGAATTACTAAGGCCAGAGAGCAACTTGAAAAGCAAAGGCGCAGCAATCATGAGAAGGAGATGACCATTTGTATGGTTGAGTGCATGCGAAACAAAAAGTTTCCTGATGATATATCTATTCCAGATCTGAAAGAATTTGATAAGATAATTGAGAAAAATCTGAAAGAGATTGAGAACAAGATTGTTGATCTCCATTTATCCAATTAA 480 0.3854 MTGRKVKLAFISNDSARKASYRKRKKSIIKKVRELAILCDVPVCAIISNPVDSKTVVWPDRERANQVIERYRNSTKKDETKNMNQESFLLQRITKAREQLEKQRRSNHEKEMTICMVECMRNKKFPDDISIPDLKEFDKIIEKNLKEIENKIVDLHLSN 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01153 159 Coils Coil 90 113 - -
Trre8g01153 159 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre8g01153 159 PANTHER SERUM RESPONSE FACTOR HOMOLOG 4 150 - -
Trre8g01153 159 SUPERFAMILY SRF-like 4 90 IPR036879 GO:0003677|GO:0046983
Trre8g01153 159 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Trre8g01153 159 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Trre8g01153 159 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01153 Trre-Chr8 8420434 8420913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01153 1 152 MADS-box Gene Family AT5G26630 44.444 3.46e-37 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre8g01153 SRF-TF 5.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01153 - - gmx:100792290 172.94