Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01143 ATGGGCTACCTCAATCTTTCTTGCAAAGCTCAATCTTCAATTTCAACCTCAAATTCTCTATCATCATCACCATCCTCATCAAAACCAAACAAAGACAAAGACAAAGAAAAAACCATCAAGATCCAACAGTTTCAATACAGTGATCTTGAAGCAGCAACAAATGGTTTCTCAGACAACAAACTTCTTGGTAAAGGTAGCCATGGTTATGTCTACAAAGCAATTGTTCATGGTAAACCTGTAGCTGTAAAAAGACCATCTAGACCTCACTCTCTTAGAAAACCCATCTCATCATCTTCACCTGAAATCACAAATGAAGTCGATAACGAAATCGATATTTTATCGAAAATTCAAAGTCCCAGGTTGGTTAATCTTGTTGGTTTTACAAATGATTCAAAAGATAGGCTTTTGGTTGTTGAATTTATGTGTAATGGTACCCTTTTTGATGTTCTTCATTCTTCTTCAAGAACCCTTAATTGGGGTAGAAGAATTCGTTTAGCTTTACAAACTGCTAAAGCTATTGATACACTTCATTCATCAAATCCACCTGTTATTCATAGAGATATTAAATCTGCTAATGTTCTTATTGATCAAAATTATAATGCTAGATTAGGTGATTTTGGTTTAGCATTAATGGGTTTTGATAGGGTAAGGTCAACTCCACCTGCTGGTACTATGGGTTATCTTGATCCTTTTTATGTAACTCCTGATAATTTGAGTACTAAGATTGATGTTTTTAGTTTTGGGATTTTGTTGTTGGAGATTATAAGTGGAAGGAAAGCAATTGATGTTGCTTATTCGCCGCCGTCTGTTGTGGATTGGGCTATTCCACTTATTAAGAAAGGGAAAATTTTTGCTGTTTATGATCCTAGAATACCACCTCCTAAGGATGTTTTTTTGAGGAAACAATTGGCTTTGATTGCGGCGAAATGTGTTAGGTCTTGTAGGGAAAGAAGGCCTTCGATGAACGAGGTTGTTAATTGGCTTTGTGGGTTGTGTAAATTGGTTCCGAATCATTCGTGGAATGGTTTTAATATTAATATTAATAACCCTTGTATGATGGTTGAAACCGTTGGACGTCCGGTTGAACCGAGAAACAGACAGTTAGGTAGTTCGAGGTTTGCGGAAGAACGGAATTTTGCTGGTTTGGATGCTAGATTGTCGAAGTCTGCATTGAGATATTCGAGGAGAGTGTATTCGGATTTGGGGTTTAGCAGTAATTTGATGGATCTTATGGCTACGACTGAGGAGACGGAATTTATACGAGATGCTGATGGTGTTGTTCAACCTAGTTCTTCTAAATCAGTTGAACAAGTTTCAAGTTCTAGATTTGGAAGCGGAAGATATTTTGCAAGAGGTAAAAATCTATACAGGCCTTGTGGTACTGATAAAGATGCTTTTGGCTTGAGTAAAGGCGAAATTGTTGGGGAGAATTCTTCGAATTTAAAGCAGGATGAGGTTTCTGGATCAACTTTGACTTCTCTTGCGACTGAGGTTATCTAG 1500 0.3727 MGYLNLSCKAQSSISTSNSLSSSPSSSKPNKDKDKEKTIKIQQFQYSDLEAATNGFSDNKLLGKGSHGYVYKAIVHGKPVAVKRPSRPHSLRKPISSSSPEITNEVDNEIDILSKIQSPRLVNLVGFTNDSKDRLLVVEFMCNGTLFDVLHSSSRTLNWGRRIRLALQTAKAIDTLHSSNPPVIHRDIKSANVLIDQNYNARLGDFGLALMGFDRVRSTPPAGTMGYLDPFYVTPDNLSTKIDVFSFGILLLEIISGRKAIDVAYSPPSVVDWAIPLIKKGKIFAVYDPRIPPPKDVFLRKQLALIAAKCVRSCRERRPSMNEVVNWLCGLCKLVPNHSWNGFNININNPCMMVETVGRPVEPRNRQLGSSRFAEERNFAGLDARLSKSALRYSRRVYSDLGFSSNLMDLMATTEETEFIRDADGVVQPSSSKSVEQVSSSRFGSGRYFARGKNLYRPCGTDKDAFGLSKGEIVGENSSNLKQDEVSGSTLTSLATEVI 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01143 499 SUPERFAMILY Protein kinase-like (PK-like) 39 348 IPR011009 -
Trre8g01143 499 ProSiteProfiles Protein kinase domain profile. 56 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g01143 499 MobiDBLite consensus disorder prediction 1 36 - -
Trre8g01143 499 FunFam Serine/threonine-protein kinase-like protein At1g28390 24 140 - -
Trre8g01143 499 Gene3D Transferase(Phosphotransferase) domain 1 141 340 - -
Trre8g01143 499 Gene3D Phosphorylase Kinase; domain 1 26 140 - -
Trre8g01143 499 ProSitePatterns Protein kinases ATP-binding region signature. 62 83 IPR017441 GO:0005524
Trre8g01143 499 FunFam Serine/threonine-protein kinase-like protein 141 341 - -
Trre8g01143 499 Pfam Protein kinase domain 57 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g01143 499 ProSitePatterns Serine/Threonine protein kinases active-site signature. 183 195 IPR008271 GO:0004672|GO:0006468
Trre8g01143 499 MobiDBLite consensus disorder prediction 1 27 - -
Trre8g01143 499 PANTHER OS01G0253100 PROTEIN 17 330 - -
Trre8g01143 499 SMART serkin_6 56 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01143 Trre-Chr8 8305380 8306879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01143 28 328 Receptor kinase-like Gene Family AT3G59420 42.903 3.04e-74 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Trre8g01143 Pkinase 1.7e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01143 - - vum:124832395 740.725