Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01136 ATGGGTAGGGGTAAAATTGAGATAAAAAGAATTGAAAATGCTAATAGTAGACAAGTTACATTTTCAAAGAGAAGAACTGGGTTGTTGAAAAAGGCTCAGGAGCTAGCTATTCTTTGTGATGCTGAGGTTGCTGTTATCATTTTTTCAAACACAGGGAAACTTTTTGAGTTTTCAAGTTCTGGTATGAAGCGAACACTTTCAAGATACAACAAATGCACAGATTCTTCAGAGAGTGCATCAGTAGAATATAAAACAGAGAAGGATGATACTAAGATGGTGGAGATTCTTAAAGATGAAATTGCAAAGCTAGAAACAAATCAATTACGGCTATTGGGAAAGGACTTAACAGGATTGGGATTAAAGGAACTGCAACATCTAGAGCAGCAAATTAATGAGGGACTATTATCCGTGAAGGAGAGGAAGGAAGAATTGCTTATGGAACAACTGGAGCAGTCTAGAATACAGGAGCAGAAGGCTATGCTGGAGAATGAAACTTTGCGAAGACAGGTTGAGGAGCTTCGATGCTTGTTTCCGATAACAGAACATGTAATGCCAACATATCTTCAGTATCACCATCTGGAAAGAAAGAATTCATTTATAGATAATGGTGTTAAATGTCCCAGCTTCGCCAGAAACTGTGCAAATGACAAAGCTGATTCAGACACCACATTGCATCTAGGGTTACCAACTGATGTTCATCACAAGAAGACTCCTGAGAAAAAAACTTTTTCTGATGATTCATAG 744 0.379 MGRGKIEIKRIENANSRQVTFSKRRTGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKRTLSRYNKCTDSSESASVEYKTEKDDTKMVEILKDEIAKLETNQLRLLGKDLTGLGLKELQHLEQQINEGLLSVKERKEELLMEQLEQSRIQEQKAMLENETLRRQVEELRCLFPITEHVMPTYLQYHHLERKNSFIDNGVKCPSFARNCANDKADSDTTLHLGLPTDVHHKKTPEKKTFSDDS 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01136 247 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre8g01136 247 Pfam K-box region 91 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre8g01136 247 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre8g01136 247 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre8g01136 247 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre8g01136 247 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Trre8g01136 247 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Trre8g01136 247 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Trre8g01136 247 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre8g01136 247 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 164 - -
Trre8g01136 247 Gene3D - 14 93 IPR036879 GO:0003677|GO:0046983
Trre8g01136 247 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Trre8g01136 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Trre8g01136 247 Coils Coil 149 176 - -
Trre8g01136 247 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01136 Trre-Chr8 8243417 8247182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01136 1 247 MADS-box Gene Family AT5G13790 55.422 3.78e-88 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Trre8g01136 K-box 3.9e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01136 - - rcu:8259342 357.836