Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01100 ATGGATAATAAGTTTCTTTCACAACCAACAACTATAGCACTAGTAACTATTGTTTTAGTGCTTCTATACAACATATGGAGGATAAAAAAACCTAGTAACAAATCTAAGGGTATGAAACCACCAGAACCATCATATGCCTTACCTTTAATAGGTCACCTCCATCTACTAGGAAACCAAATCCCCCTTGCAAGAATCTTTGCTTCTTTTTCAGACAAATATGGTCCAATTTTCCAAATCTATTTAGGAGCATACCCTGCCCTTATTATTTCAAACCAAGAAGCAATCAAAGAATGTTTCACAACAAATGACAAAATCTTAGCTTCAAGACCAAAGTCAAGTCATGGAATCTACCTTGGTTATAACTTTGCTGGTTTTGGTTTTGCACCTTATGGCACATATTGGAGTAAGCTAAGAAAATTAACCATGCTTGAATTGCTCTCGTCTCGTCGCATAGAATCGTTGAGACATGTTTACGAATCGGAGATCGACACTTTAATTAAGGATCTATTCTTGTATGTTAAGGTTGGAAAGGTTAAGGTTGTGATTAGTGAATGGTTGGAAAGGTTAACATTTAATATAATGACAAAGATGATTTGTGGGAAAAGGTATTTTGAGTATTTACAAGATGTGGATGATGTAGAAGCACATGGTAATATTGTGAAACTTATAAAAGAATTTATGCATATTTCTGGTGAGTTTGTTCCTAAGGATTTGATTCCAATTCTTGGTTGGTTTGGTTTCCAAGGACAAGTTCTTAAATCTATGAAAAGAATTGCTAAAGATTTGGATACAGTTGTTGGAAGTTGGGTTGAAGAACATGTTGAGAAGAGTAAAGATTATGGAGTGAATGATTCAAATGAGAAACATGATTTTATTGATGTGATGCTTTCTGTGATTGAAGATGATCCTTCTTCTGGTCATAATCGTGATACTATCATCAAGGCAAATGTTATGAATCTTATGCTAGCTGGCTCAGACACAACATCAACGACAATGACATGGATCCTAGCCATATTGTTGAATAATATGAATGCTCTAAAGCATGCACAAGAGGAAATTGACCATCACATAGGCAAGGACAGAAGGGTAGAATCGTCGGACACAAAAAACCTAGTTTACTTACAAGCGATTTTCAAAGAAACATTGAGGTTATATCCACCGGGTCCACTATTAGTACCCCATGAAGGTACCGAAGATTGTTACATTCAAGGCTATTATGTTCCGAAAGGGACACGTGTGTTCGCCAATGTGTGGAAATTACATAGAGATCCAAGTATTTGGTCAGAGCCTGAAAAATTTTACCCAGAGAGATTTATTAATGAGAATGGAGAAATTGATCATGAAAGTCATCATTTTGAGTACCTTCCTTTTGGATTAGGGAGAAGAGCTTGTCCTGGATCTATGTTTGCTACACAAGTTAGTCTCATTACACTTGCTCGTTTGCTTCATGGATTTGATTTCGAATTGCCAATGGATGAAGCTGTTGATATGAGAGAAGGATTGGGTATAACCTTGCCTAAGTTAACTCCATTGCAAGTTGTTTTGACCCCGCGATTACCCTATGAACTCTATCAATGA 1578 0.3644 MDNKFLSQPTTIALVTIVLVLLYNIWRIKKPSNKSKGMKPPEPSYALPLIGHLHLLGNQIPLARIFASFSDKYGPIFQIYLGAYPALIISNQEAIKECFTTNDKILASRPKSSHGIYLGYNFAGFGFAPYGTYWSKLRKLTMLELLSSRRIESLRHVYESEIDTLIKDLFLYVKVGKVKVVISEWLERLTFNIMTKMICGKRYFEYLQDVDDVEAHGNIVKLIKEFMHISGEFVPKDLIPILGWFGFQGQVLKSMKRIAKDLDTVVGSWVEEHVEKSKDYGVNDSNEKHDFIDVMLSVIEDDPSSGHNRDTIIKANVMNLMLAGSDTTSTTMTWILAILLNNMNALKHAQEEIDHHIGKDRRVESSDTKNLVYLQAIFKETLRLYPPGPLLVPHEGTEDCYIQGYYVPKGTRVFANVWKLHRDPSIWSEPEKFYPERFINENGEIDHESHHFEYLPFGLGRRACPGSMFATQVSLITLARLLHGFDFELPMDEAVDMREGLGITLPKLTPLQVVLTPRLPYELYQ 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01100 525 PRINTS P450 superfamily signature 376 387 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre8g01100 525 PRINTS P450 superfamily signature 455 464 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre8g01100 525 PRINTS P450 superfamily signature 323 340 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre8g01100 525 PRINTS E-class P450 group I signature 94 115 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre8g01100 525 PRINTS E-class P450 group I signature 332 358 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre8g01100 525 PRINTS E-class P450 group I signature 375 393 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre8g01100 525 PRINTS E-class P450 group I signature 189 207 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre8g01100 525 PRINTS E-class P450 group I signature 312 329 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre8g01100 525 PRINTS E-class P450 group I signature 416 440 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre8g01100 525 PRINTS E-class P450 group I signature 70 89 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre8g01100 525 PRINTS E-class P450 group I signature 454 464 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre8g01100 525 PRINTS E-class P450 group I signature 464 487 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre8g01100 525 Pfam Cytochrome P450 41 507 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre8g01100 525 PANTHER CYTOCHROME P450 82C3-RELATED 16 524 - -
Trre8g01100 525 CDD CYP82 74 518 - -
Trre8g01100 525 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 457 466 IPR017972 GO:0005506|GO:0016705
Trre8g01100 525 SUPERFAMILY Cytochrome P450 40 518 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre8g01100 525 FunFam Cytochrome P450 82C4 30 516 - -
Trre8g01100 525 Gene3D Cytochrome P450 25 514 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01100 Trre-Chr8 7975650 7978243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01100 41 524 Cytochrome P450 AT4G31940 47.976 1.22e-161 468
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01100 - - gmx:100790675 791.571