Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01095 ATGAAGAGATTGCGTTCAACCGAAGATCTTCACTCTTACAACGGTGAAAAGAACGCTGCTGATAAGAATTCAAATCTTTCTGTTAAGGAATCCAATTCAAATCTCAGCCGTTCGTTTTCTTCTACTGGTCAAAGAAGTTTTTACTATAAACAAGAGAATGTGAGGAAGAATTTGATTTCATCGTCGTCGTCTTCTTCGCGTTTTGATAGGGATAGAGATAGGGATCGGACGGTGGAGGAAGATCGAGAAAGTTCTAGAATTGTTCGTAAGCGATCTGAACATGATTTTGATCGGAGGAAGGGTTTTGATCGGTATAGTAGGGATGGTGCTGGTGGTTACAGTGGAGGTGGAGATAGAGATAGAGATAGGAATTCGATTCATCGGTCGGAGAGTTTTTGTGGTGGTTCGAGGAGGGAGTTTCCGAAGGGTTTTCGATCGGAGAGGGATCGATCGAGGAGGGAAGGGAGTGTATCGTCGTGGAGGAGAGGATTGAAGGATTTTGATGAGAGTAGTAGAGGGTGGAATAGTAGGGTTGAAGAGAGAATTGCGAGGTCGCCAAAGGGTTTTTCGAGGGATGTGAAATCGCCTAGTTGGTCTAAGGATTCGGAGAGTGAACAATCGAAGAAGAGATCTTCGGAGTCTCCGAGAGTGTTTAGAGAGGCTACTAAGTCGCCTTCTTGGTCGAAGGATTCTGAGAGTGAGCAATCGAAAAGTGTTAGTGTTGAGGTGAAGAAAAGTGATGAGTTGTTGCAGCAGGTTCAGAGTGGAAGTGGTAGTGATGAAATGGAAGAGGGGGAGCTTGTACCTGAACCTGTCACTAAAGCTGAGGCCGAAGCGGCTTGTAAAGATAAAGATGCTGCAGCTGGAAGGGAGAGCTTGCAAGTCTCTGAGGATGAACAAGTGCATAAGAAGAATGAATTTGGTTCGAGCGGTGCAGATGTTATGGAAGAAAAACAAATGTTGTTGGGTGAGAAAGAGGTGAAAACTATGGAGGATGTTGATTCTGAGGTAAAAGATGCAGACAAGGAAGTTCATGAATTGCCTAAGAATCAAGATAAATCTACTAAGGAAATTCCTGTTACCAAGGCTGAGATTAGAACCGTTTATAATGATGATGTTAAGAAGGATGTGTGTTTAAATGGTGATGATACTCGGCACAAGGAGAAGGAGACAGAGAAGGGGGAAACTAAGGAGAAGGCATTGCTTAATGAAGATGAGCATGGGGTGGACAAGGGTTTAGGTGGTGATAAACTTGACAAAAACGATGAAGGCTCAACAGAGAATGCAGTTGCTGATGAAATGAAGGAAGAAACGATGATGGAGAGTGTGACAAATAATGTAAAGGATAAAGGCAAAAGCATCTCGGTCGCACCTGATGTTGCTCATTCTTCAGAAGATGGCTTGTGGACTGATAGAGGATCGAAAGATCTCACAACATGCTCTGCAGATGTCATGGAAGGTCCAAGCACAAGAGGGTTTGAGCTTTTCTCTAGATCTCCGGTGAGAAAAGTAGAAAAATCTGATCGCTCGGTTCTCAAAAAGGAGAATGATGACAGTCTTGCAATGGGGCAGCTTGATCTTACTCTGAGCTTGCCAAATGTTCTGTTACCGATAGGAGCTCAGGAGACAGCGTCGCAAGCCCCTGGTTCTCCTAGTCAAGCGCTTAGTGTTCAGTCTCTAAGTAATACATTTTGCACTAACTCGGATGGTTTTACTGCATCAATGTCATTTTCAGGTTCACAATCATTATATCACAATCCAAGTTGTTCGCTAACGAAAAATTCAGTTGACTATGAACAATCTGTTGGCAAATCAGTTGGTAGTCGCCCCTTGTTCCAGGGATTTGATTGGCAAGCCCTATCTCAGGCTGATCCCAAGCAGAAGGAAGTTCCCTCTGGTCAGAGAACATCGATGAATGGGAACGGCTCTCTTTACCAGCCTCAAGCATCGTGGGGAGTTTTAGATACTCAAGCTTTGAAAGGTCAACATTCTAGGCCTCTAGAAGGGAGCTCAAAAATGGGAAGTGGGCTTCAAAGGCAATTGAGTTTTCATAAGCAGCTTTCAGGAAATTCAAGACAGCATGATGATGTTCGATCTCCTACACAGAGTGTTGGGTCACATGACAATGGATCAAATTATAGTTTTGAGAAAAAGAGGGAGGTTAGGGAAAGAAGTAGCAGTAGTCTACATCGATCAAATAGCCAGAAGGGACAAGATCATTTTCTGATGGGTGGACTTGATTTTGTTAAGACAATCATTGCAAGAATAGTTTCTGAACCTGTGCTAGCAATGTCCAGAAAGTTCCATGAAATGAATGGACAGTACATAACGCGTATGAAAGAGGGTATCCGGGAACTCATGGTCAATGCAGATAACCAGGGACAAATACTTGCTTTTCAAAATGTTTTGCAGAACAGGTCTGACATAACCTATGATGTCCTAGTGAAGTGTCACCTAGCGCAACTGGAAATTTTGGTTGCATTAAAAACTGGTGTAGTCCATTATCTTCACCTGGATGATAACATTTCATCTTCTGATTTAGCTCAAGTTTTTCTGAACTTGAAGTGTAAGAATTTGTCATGTCGAAGTCAGTTGCCCGTCGATGAATGTGATTGCAAGCTTTGTGCGCAGAAGAACGGTTTTTGCAGGGAATGTATGTGTCTTGTGTGTTCTAAGTTTGACAATGCATCGAGCACATGTAGTTGGGTGGGTTGTGATGTTTGTCTTCACTGGTGTCATACTGACTGTGGATTACGAGAATCTTATATTAGAAATGGACACAGTACTACTGGAACAAAAGGGATGACTGAGATGCAGTTTCACTGCATTGCTTGTGATCACCCTTCTGAGATGTTTGGCTTTGTCAAAGAGGTGTTTCAAAATTTTGCAAAAGACTGGTCACCCGAATCTCTTTGCAAGGAACTTGAATATGTGAAGAGAATCTTTTCTGCTAGCAAGGATATTAGAGGGAGACAGTTGCATGAGATTGCAGATAAAATGTTGCCGAGCCTGGCTATTAAGTCTAACATTCCTGAGGTTGTAAGACACATCATGTCTTTCTTTTCTGATTGTGATACTTCCAAATTACCCATGACATCAAACTTTGCTGGGAAGGAACAAGTCAAAGAAAGCAATGGGGTAGCTGGGCCCAGCCAGGAAGCTGCTTGGCTAAAATCTATTTATTCAGAAAAGCCAGTTCTGTTAGAAAGACCTGCAAGCATCCTTCCAAGATTTGACCAGAATGATAAAAGGACACTGGTGCAAGAGTTGCAGATGAGTGGTAGTATCCAAAAGGACTTCTGTTTTGATGAATTAGAAAGTATAATAAAAATCAAACATGCAGAGGCCAAAATGTTCCAATCTCGTGCTGATGATGCTAGGAGAGAAGCTGAAGGGTTAAAACGCATTGCCCTTGCAAAGAATGAGAAAATTGAAGAAGAGTATGCCAATCGAATTGCCAAGCTGCGTTTTGCCGAGACAGATGAATTGCGTAAACAAAAGTTCGAAGAACTCCAAGCAATAGAGAGGGCACATATGGAGTATTTGAACATGAAAACGAGAATGGAGTCGGACATTAAAGATCTGTTATCCAAAATGGAAGCTACTAAAATGAACCTTGCCATGTGA 3627 0.424 MKRLRSTEDLHSYNGEKNAADKNSNLSVKESNSNLSRSFSSTGQRSFYYKQENVRKNLISSSSSSSRFDRDRDRDRTVEEDRESSRIVRKRSEHDFDRRKGFDRYSRDGAGGYSGGGDRDRDRNSIHRSESFCGGSRREFPKGFRSERDRSRREGSVSSWRRGLKDFDESSRGWNSRVEERIARSPKGFSRDVKSPSWSKDSESEQSKKRSSESPRVFREATKSPSWSKDSESEQSKSVSVEVKKSDELLQQVQSGSGSDEMEEGELVPEPVTKAEAEAACKDKDAAAGRESLQVSEDEQVHKKNEFGSSGADVMEEKQMLLGEKEVKTMEDVDSEVKDADKEVHELPKNQDKSTKEIPVTKAEIRTVYNDDVKKDVCLNGDDTRHKEKETEKGETKEKALLNEDEHGVDKGLGGDKLDKNDEGSTENAVADEMKEETMMESVTNNVKDKGKSISVAPDVAHSSEDGLWTDRGSKDLTTCSADVMEGPSTRGFELFSRSPVRKVEKSDRSVLKKENDDSLAMGQLDLTLSLPNVLLPIGAQETASQAPGSPSQALSVQSLSNTFCTNSDGFTASMSFSGSQSLYHNPSCSLTKNSVDYEQSVGKSVGSRPLFQGFDWQALSQADPKQKEVPSGQRTSMNGNGSLYQPQASWGVLDTQALKGQHSRPLEGSSKMGSGLQRQLSFHKQLSGNSRQHDDVRSPTQSVGSHDNGSNYSFEKKREVRERSSSSLHRSNSQKGQDHFLMGGLDFVKTIIARIVSEPVLAMSRKFHEMNGQYITRMKEGIRELMVNADNQGQILAFQNVLQNRSDITYDVLVKCHLAQLEILVALKTGVVHYLHLDDNISSSDLAQVFLNLKCKNLSCRSQLPVDECDCKLCAQKNGFCRECMCLVCSKFDNASSTCSWVGCDVCLHWCHTDCGLRESYIRNGHSTTGTKGMTEMQFHCIACDHPSEMFGFVKEVFQNFAKDWSPESLCKELEYVKRIFSASKDIRGRQLHEIADKMLPSLAIKSNIPEVVRHIMSFFSDCDTSKLPMTSNFAGKEQVKESNGVAGPSQEAAWLKSIYSEKPVLLERPASILPRFDQNDKRTLVQELQMSGSIQKDFCFDELESIIKIKHAEAKMFQSRADDARREAEGLKRIALAKNEKIEEEYANRIAKLRFAETDELRKQKFEELQAIERAHMEYLNMKTRMESDIKDLLSKMEATKMNLAM 1208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01095 1208 CDD PHD_OBE1_like 886 945 IPR047578 -
Trre8g01095 1208 MobiDBLite consensus disorder prediction 668 711 - -
Trre8g01095 1208 MobiDBLite consensus disorder prediction 622 647 - -
Trre8g01095 1208 MobiDBLite consensus disorder prediction 17 65 - -
Trre8g01095 1208 MobiDBLite consensus disorder prediction 267 311 - -
Trre8g01095 1208 MobiDBLite consensus disorder prediction 625 647 - -
Trre8g01095 1208 MobiDBLite consensus disorder prediction 318 358 - -
Trre8g01095 1208 Pfam PHD - plant homeodomain finger protein 856 979 IPR032881 -
Trre8g01095 1208 MobiDBLite consensus disorder prediction 114 227 - -
Trre8g01095 1208 Coils Coil 1116 1147 - -
Trre8g01095 1208 MobiDBLite consensus disorder prediction 245 259 - -
Trre8g01095 1208 Pfam Coiled-coil region of Oberon 1080 1196 IPR032535 -
Trre8g01095 1208 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 1206 IPR004082 -
Trre8g01095 1208 MobiDBLite consensus disorder prediction 659 737 - -
Trre8g01095 1208 MobiDBLite consensus disorder prediction 712 729 - -
Trre8g01095 1208 MobiDBLite consensus disorder prediction 66 106 - -
Trre8g01095 1208 MobiDBLite consensus disorder prediction 1 358 - -
Trre8g01095 1208 MobiDBLite consensus disorder prediction 1 16 - -
Trre8g01095 1208 MobiDBLite consensus disorder prediction 376 443 - -
Trre8g01095 1208 MobiDBLite consensus disorder prediction 376 472 - -
Trre8g01095 1208 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 966 985 IPR004082 -
Trre8g01095 1208 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 893 913 IPR004082 -
Trre8g01095 1208 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1142 1164 IPR004082 -
Trre8g01095 1208 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 806 821 IPR004082 -
Trre8g01095 1208 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 847 868 IPR004082 -
Trre8g01095 1208 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 821 836 IPR004082 -
Trre8g01095 1208 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1103 1123 IPR004082 -
Trre8g01095 1208 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 767 789 IPR004082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01095 Trre-Chr8 7951291 7956029 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01095 856 1004 PHD Gene Family AT5G57380 26.846 1.15e-11 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01095 - - gmx:100807816 1478.38