Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01093 ATGGAACAAGTTCAAGAGTTTCAACCTCAATCAACACTAGGTAAAGAAAATGCAGATGAAGTGGTTGATGAAAGTTCTGAACATGGTAAAGGGGAAACACCAGAAGAATTATTGAGTAGTCCTCCAAAAGTTGATTCTGAAGTTGAAGTTCTTCATGAGAAGGTTACTAAACAAATAATTAAGGAAGGTCATGGTCAAAAACCTTCCAAGTATTCAACATGTTTCTTCCATTACAGGGCGTGGTCTGAGAACACGGAGCACAAATTTGAAGATACATGGCAGGAGCAACGGCCAACGGAGATGGTAATTGGAAAAGAGAAGAAAGAAATGACTGGTTTGGGCATTGGAGTGGTAAGCATGAAAGCTGGGGAGCGAGCGTTGCTGCGTGTGAGCTGGGAATTAGGATATGGAAAGGAAGGAAGCTTTTCTTTTCCTAATGTTCCACCCATGGCAGATTTAGTTTATGAAGTTGAGCTCATTGGTTTTGATGAAACAAAAGATGGAAAAGCTCGTAGTGATATGACAGTGGAGGAGAGGATTGGTGCAGCTGATCGAAGAAAGATGGACGGAAATGCTCTGTTTCAGGAAAAGAAACTAGAGGAGGCCATGCAACAGTATGAAATGGCCATAGCTTATATGGGAGATGACTTCATGTTCCAGTTATTTGGGAAGTATAGGGATATGGCATTGGCTGTAAAGAATCCGTGCCATCTTAACACGGCAGCCTGTCTGATAAAGCTGAACCGATACGAAGAAGCTATAGGACAATGCAGCATTGTATTGAGTGAGGATGAGAACAATTTGAAGGCTTTATTTAGGAGAGGTAAGGCTAGAGCAGCACTTGGGCAGACAGATGCTGCCAGGGAAGATTTTCTAAAAGCACGTAAACATGCCCCTGAAGATAAAGCAATTGCAAGAGAATTGAAGTTACTTGCTGAACATGACAAAGCTATTTATCAAAAGCAGAAAGAGATCTATAAAGGAATATTTGGACCAAGGCCTCAACCAGTACCTAAGAAAAGGAATTGGCTTTTACTTATTTGGCAGTGGTTGGTTTCAGTGTTTTATAGCTTTATCACACTCTTCAACCGCGAAAAGAACAAATCTGACTAA 1113 0.4106 MEQVQEFQPQSTLGKENADEVVDESSEHGKGETPEELLSSPPKVDSEVEVLHEKVTKQIIKEGHGQKPSKYSTCFFHYRAWSENTEHKFEDTWQEQRPTEMVIGKEKKEMTGLGIGVVSMKAGERALLRVSWELGYGKEGSFSFPNVPPMADLVYEVELIGFDETKDGKARSDMTVEERIGAADRRKMDGNALFQEKKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNTAACLIKLNRYEEAIGQCSIVLSEDENNLKALFRRGKARAALGQTDAAREDFLKARKHAPEDKAIARELKLLAEHDKAIYQKQKEIYKGIFGPRPQPVPKKRNWLLLIWQWLVSVFYSFITLFNREKNKSD 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01093 370 MobiDBLite consensus disorder prediction 1 15 - -
Trre8g01093 370 SUPERFAMILY TPR-like 175 327 IPR011990 GO:0005515
Trre8g01093 370 Gene3D Tetratricopeptide repeat domain 165 296 IPR011990 GO:0005515
Trre8g01093 370 ProSiteProfiles TPR repeat profile. 268 301 IPR019734 GO:0005515
Trre8g01093 370 FunFam Peptidylprolyl isomerase 168 296 - -
Trre8g01093 370 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 71 163 IPR001179 GO:0003755
Trre8g01093 370 PANTHER ARYL HYDROCARBON RECEPTOR INTERACTING PROTEIN RELATED 98 339 IPR039663 -
Trre8g01093 370 Gene3D - 39 164 IPR046357 GO:0003755
Trre8g01093 370 MobiDBLite consensus disorder prediction 1 46 - -
Trre8g01093 370 SUPERFAMILY FKBP-like 42 162 - -
Trre8g01093 370 MobiDBLite consensus disorder prediction 17 34 - -
Trre8g01093 370 SMART tpr_5 183 216 IPR019734 GO:0005515
Trre8g01093 370 SMART tpr_5 268 301 IPR019734 GO:0005515
Trre8g01093 370 SMART tpr_5 234 267 IPR019734 GO:0005515
Trre8g01093 370 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 67 160 IPR001179 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01093 Trre-Chr8 7937720 7940453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01093 48 336 Calmodulin-binding Proteins AT5G48570 32.770 7.73e-31 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01093 - - gmx:100790587 655.595