Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01086 ATGGCATTTCACGTTGCTTGTCCAATTACATGTCGGAGAATTTGTTTCTGTTCGTTAGGGTTTCTGCGTTCTCTTCAACGAACGAACAACCCTACGAGTGGTTTTCTCGAAGATGTGGCGGTGCTCGGTGATTTTCTATCGGAAAATAAACGGAAAGAAGATACTACGATTCAAGTTGTTGTTCCTAAAGTTGTTCCGCCGCCGCCGGAGATTGTTCCTGTTAGCGGTGATGTGCTTAATGATGAATCTGCTTCTATGAAAGCTAAGCGTGTTGCTCTTCAGAGAAAAGGTGCTGCTGCTATGATTGCTGCTGAGGAGTATGCTAGGAAGTTTGAGTCTGGTGATTTGTTGGACACATCGGGAAATGTTAACGGAGAAGAACAAGGGCAATCCAATGTCAAGGTCTTTTGTCGAATGTGTAATCGCGTTGAGAACGAAGGAAGTGAGAAAGCGAAAAAGATGCTGTCGTGTAAAAGTTGTAGCAAGAAGTACCATAGGAGCTGCTTGAAAAGTTGGTCTAATAATAGAGATTTATTTCATTGGAGTTCGTGGACCTGTCGTGCTTGCCGAATTTGTGAGGCTTGCAGAAGGACCGGCGATCCAAGTAAATTCATGTTTTGCAAAAGATGTGATGGTGCTTACCATTGTTACTGTCTGCAACCTCCTCATAAGAATGTTAGTACCGGGCCCTATTTGTGCCCAAAACACACAAAGTGTCACAGTTGCGCATCCAATGTCCCTGGAAATGGACTAAGTGTGAGGTGGTTTCTGGGATACACGTGTTGTGATGCATGTGGAAGATTGTTTGTGAAAGGGAATTACTGTCCTGTTTGTCTGAAGGTTTACAGAGATTCAGAATCAACACCAATGGTTTGCTGTGATCATTGCCAGCGCTGGGTACATTGCCAGTGTGATAATATTAGTGACGAAAGATATCACCAATTTCAAATGGATGGGAATCTGCAGTATACATGTCCTACTTGTCGTGGGGAATGTTATCAGGTCAAGAATCTTGAAGATGCTGTTCAAGAGCTTTGGAGGAGAAAGAATATTGCTGATAAAGATTTAATTACAAGCTTGAGGGCTGCAGCTGGTTTACCGACGCAAGAAGAAATATTTTCTATTTCACCATATTCTGACGATGAGGATGGTGGGACTCTGAAGATAAAGAGTGATTCAGCACGTTCCTTTAAGTTCTCTTTTAAGAATTTTTCCAATAACTCGCCTACAAAGATGAAAGATTATGGAAAGAAATCTTCAACCAAAAAGACTTCTAAGAAAAAGGACTCTCTGTCATTCATGACTGGTAAAATTGATGCACACCATAGTTATGAAGGACATTGTTTTGATGACGATAAGAATGATGATATGCAATCCCAGAGAAATGAAGGTCCAGACGTTTATTCATCACCTGCTACCGGAAGCCTGAGTCAAACTGAAGTTCCTTATCCCGTCAATCAGCCAGGGATTTTGAAACGTAAGTTTGTTGATGAGGTGATGGGCAGTGATGAAGAAAGGAAACCCAGAGTTGTTCGAATTAAAAGCAATAAGCCAAATAATTTGGATAGTGAAGAGGAGAGTGGAAAACGTGGTGATAAGACTCAGAATGTGAAAGGGAAAAAGTTGGTTATAAATTTGGGTGCACGGAAAATTAATGTAGCTAGTTCTCCGCTGTCCGATAATGCAAGCTTCCAAAGAGATAAAGATCTGGTTACTGCCAATGGAAATGAAAATCTAGCCCATTTGACGAAGGGAAACAAGTTTGCATTAGATAGACATGATGGAACAGCTAGACATATTGACGGTAAAGGAAGTAGGGTTGACTCTGGCCAATCAAAACATCTAAAGGTTTCAGGAAGAGAAGGAAATATGATCAAGTTGGGAAAAGTTAAGCCAGGTGTTTCTGAATTCAACTTCACCTCTGGTAGAGGTAATATGTCTGATGGGTGTGAAGTTGGTCCTTTAGAGCGATCTCACATCATGCGGGGAAAACGCAGTACTCATGGAATGGCCGATCAAGCTGGATTAGATGCAACATCAAGAGGTGAAAGGACATATTTGGCGAAGCAGTCGGAAGGTAGCTCTGATGTATATGATGAGACACATGACAATAATCACACGCCTTCACATTCTTTGCCAAAAGATTCGAAACCTTTACTGAGATTTAAATTCAAAAGGCCTAGCATTGAAAGTCAAAGTTCTTCTCATCAGGAAGAGAAGACCACAGTCAAGGGCCAGAGGTCGAAAAGGAAGAGGCCTTCACCTTTTAAAGAAATATCATTGTTTAATAACTCTGAAGGTGTAAGTCAATCTCCTGGAGACACTGTAAATGATGAGATCATGGATGCAAACTGGATTTTGATGAAATTGGGAAATGATGCAATTGGAAAGAGAGTTGAAGTTCATCAGACATCTGAGAATTCTTGGCACAAGGGAGAGGTTACTGACATAGTTGAAGGCACCTCAAAGTTACATGTTACTTACGATGATGGAAAAGTGAGTATCGTGGAACTCATGAAGCAGGGCGTCCGTTTTGTTCCTCAAAAGCAAAAGAGATCAAAATCATGA 2568 0.4124 MAFHVACPITCRRICFCSLGFLRSLQRTNNPTSGFLEDVAVLGDFLSENKRKEDTTIQVVVPKVVPPPPEIVPVSGDVLNDESASMKAKRVALQRKGAAAMIAAEEYARKFESGDLLDTSGNVNGEEQGQSNVKVFCRMCNRVENEGSEKAKKMLSCKSCSKKYHRSCLKSWSNNRDLFHWSSWTCRACRICEACRRTGDPSKFMFCKRCDGAYHCYCLQPPHKNVSTGPYLCPKHTKCHSCASNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSESTPMVCCDHCQRWVHCQCDNISDERYHQFQMDGNLQYTCPTCRGECYQVKNLEDAVQELWRRKNIADKDLITSLRAAAGLPTQEEIFSISPYSDDEDGGTLKIKSDSARSFKFSFKNFSNNSPTKMKDYGKKSSTKKTSKKKDSLSFMTGKIDAHHSYEGHCFDDDKNDDMQSQRNEGPDVYSSPATGSLSQTEVPYPVNQPGILKRKFVDEVMGSDEERKPRVVRIKSNKPNNLDSEEESGKRGDKTQNVKGKKLVINLGARKINVASSPLSDNASFQRDKDLVTANGNENLAHLTKGNKFALDRHDGTARHIDGKGSRVDSGQSKHLKVSGREGNMIKLGKVKPGVSEFNFTSGRGNMSDGCEVGPLERSHIMRGKRSTHGMADQAGLDATSRGERTYLAKQSEGSSDVYDETHDNNHTPSHSLPKDSKPLLRFKFKRPSIESQSSSHQEEKTTVKGQRSKRKRPSPFKEISLFNNSEGVSQSPGDTVNDEIMDANWILMKLGNDAIGKRVEVHQTSENSWHKGEVTDIVEGTSKLHVTYDDGKVSIVELMKQGVRFVPQKQKRSKS 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01086 855 PANTHER HL01030P-RELATED 95 519 - -
Trre8g01086 855 SUPERFAMILY FYVE/PHD zinc finger 126 191 IPR011011 -
Trre8g01086 855 Pfam PHD-finger 274 329 IPR019787 -
Trre8g01086 855 ProSitePatterns Zinc finger PHD-type signature. 137 189 IPR019786 -
Trre8g01086 855 SUPERFAMILY FYVE/PHD zinc finger 181 242 IPR011011 -
Trre8g01086 855 MobiDBLite consensus disorder prediction 500 539 - -
Trre8g01086 855 MobiDBLite consensus disorder prediction 662 759 - -
Trre8g01086 855 MobiDBLite consensus disorder prediction 695 724 - -
Trre8g01086 855 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 331 IPR013083 -
Trre8g01086 855 ProSiteProfiles Zinc finger RING-type profile. 275 329 IPR001841 -
Trre8g01086 855 MobiDBLite consensus disorder prediction 446 485 - -
Trre8g01086 855 Gene3D - 791 839 - -
Trre8g01086 855 MobiDBLite consensus disorder prediction 410 432 - -
Trre8g01086 855 MobiDBLite consensus disorder prediction 500 537 - -
Trre8g01086 855 ProSiteProfiles Zinc finger PHD-type profile. 272 331 IPR019787 -
Trre8g01086 855 SMART PHD_3 191 237 IPR001965 -
Trre8g01086 855 SMART PHD_3 274 329 IPR001965 -
Trre8g01086 855 SMART PHD_3 136 190 IPR001965 -
Trre8g01086 855 SUPERFAMILY FYVE/PHD zinc finger 272 330 IPR011011 -
Trre8g01086 855 FunFam PHD finger family protein 131 246 - -
Trre8g01086 855 FunFam PHD finger family protein 269 331 - -
Trre8g01086 855 MobiDBLite consensus disorder prediction 461 484 - -
Trre8g01086 855 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 246 IPR013083 -
Trre8g01086 855 ProSiteProfiles Zinc finger PHD-type profile. 134 192 IPR019787 -
Trre8g01086 855 MobiDBLite consensus disorder prediction 415 432 - -
Trre8g01086 855 MobiDBLite consensus disorder prediction 446 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01086 Trre-Chr8 7875871 7882999 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre8g01086 PHD 5.6e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01086 - - tpra:123921045 1556.19