Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01073 ATGAAAATGAGTTGCAATGGGTGTCGCGCACTTCGCAAAGGATGTAGTCAAGATTGCATCATCAAGCCCTGCCTTGAGTGGATTAGTTCCCCTGAATCCCAAGGCAATGCCACCCTTTTCCTTGCCAAATTCTATGGTCGAACTGGCTTGCTCAACCTCCTTGCTAATGCTACCAATCAAAATTCTCAAGCTGTGTTCAAATCATTGTTGTATGAGGCTTCGGGTAGATTGGTGAATCCCACACATGGGGCACTAGGTTTATTTTGGACAGGACAGTGGAACCGATGTGAAGCTGCAGTTGAAGCCGTGTTGACTGGATCAAATATTAATGATGTTACAACTATTGATGGACAAACATCATCATGTACACTCATTGCTGAAAATCGTTTTATTCCAAGAACCTATGATATACGCCATGTGGCAGGACATACTAACGTGGATATCAAAGAGAAAACTCAATTCAAGAAAGTTGTGTCAACTTTCAAGCCCAAGCCACAAGTTGGTTTGGTAGACAAGGATACACTTTTGAGATCGATTTGGGAGAGTTGTAATGTGAAAACCGTTGAGGCTAATTCATCAATGATTGAGACAGAGCCGAATGAAACTGCTGAAACTCAAGTGAACTTGGAACTCACTCTTGGCTTCAGTTGCCAATCAAATAATAGCAAATAA 672 0.4182 MKMSCNGCRALRKGCSQDCIIKPCLEWISSPESQGNATLFLAKFYGRTGLLNLLANATNQNSQAVFKSLLYEASGRLVNPTHGALGLFWTGQWNRCEAAVEAVLTGSNINDVTTIDGQTSSCTLIAENRFIPRTYDIRHVAGHTNVDIKEKTQFKKVVSTFKPKPQVGLVDKDTLLRSIWESCNVKTVEANSSMIETEPNETAETQVNLELTLGFSCQSNNSK 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01073 223 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Trre8g01073 223 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 3 213 - -
Trre8g01073 223 Pfam Lateral organ boundaries (LOB) domain 4 104 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01073 Trre-Chr8 7743648 7744727 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01073 1 175 AS2 family AT1G68510 49.143 6.56e-56 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre8g01073 LOB 7.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01073 - - mtr:25485496 305.064