Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01063 ATGGAGAAGAACAACGACAAAACTTGTGGGATTCGTGGCAAGTGGTTCCCCGGTGCGAAATCCATTGGAGGCCACATGAGATCACACCTTGTCATATTGCCGATTCCTCCAAAGTTTGAAGCAAACCATCAAACAATAGACAATCCAACCCATCATCCAAATCAACGTGCTTCCTCACTGGATTGTCTTAGTCCAGAAAATGCTGCTGAGACTCTGATTATGATGTCCAAAGAGACATTGAAAGGTGACTCGCTTGCTCAACCTAGGTTCAACTGTGATAAGTGTGGAAAAATGTTCCGATCTTATCAAGCTCAAGGTGGGCACAAAGCAAAACATTGA 339 0.4395 MEKNNDKTCGIRGKWFPGAKSIGGHMRSHLVILPIPPKFEANHQTIDNPTHHPNQRASSLDCLSPENAAETLIMMSKETLKGDSLAQPRFNCDKCGKMFRSYQAQGGHKAKH 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01063 112 MobiDBLite consensus disorder prediction 41 60 - -
Trre8g01063 112 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 57 112 IPR044303 GO:0006355
Trre8g01063 112 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Trre8g01063 112 Pfam C2H2-type zinc finger 89 112 - -
Trre8g01063 112 SUPERFAMILY beta-beta-alpha zinc fingers 8 112 IPR036236 -
Trre8g01063 112 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 112 IPR013087 -
Trre8g01063 112 MobiDBLite consensus disorder prediction 43 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01063 Trre-Chr8 7623524 7623862 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01063 44 112 C2H2 Transcription Factor Family AT2G45120 32.222 6.27e-08 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre8g01063 zf-C2H2_6 1.7e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01063 - - mtr:112420782 85.8853