Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01062 ATGGAGAAGAACAACGGCAAAACTTGTGGGATTTGTGGCAAGTGGTTCCCCGGTGCGAAATCCATTGGAGGCCACATGAGATCACACCTTGTCCTATTGCCGATTCTTCCAAAGTTTGAAGCAAACAATCAAGCAATAGACAATCCAACCCATCATCCAAATCAACGTGCTTCCTCACTGGATTGTCTTAGTCCAGAAAATGCTGCTGAGACTCTGATTATGATGTCCAAAGAGACAGTGAAAGGTGACTCGCTTGCTCAACCTAGGTTCAACTGTGATAAGTGCGGAAAAATGTTCCGATCTTATCAAGCTCTAGGTGGGCACAAAGAAAAACATAGATATTTATTCAAATAA 354 0.4266 MEKNNGKTCGICGKWFPGAKSIGGHMRSHLVLLPILPKFEANNQAIDNPTHHPNQRASSLDCLSPENAAETLIMMSKETVKGDSLAQPRFNCDKCGKMFRSYQALGGHKEKHRYLFK 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01062 117 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 7 113 IPR044653 GO:0003700
Trre8g01062 117 Pfam C2H2-type zinc finger 89 113 - -
Trre8g01062 117 Pfam C2H2-type zinc finger 9 29 - -
Trre8g01062 117 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Trre8g01062 117 ProSitePatterns Zinc finger C2H2 type domain signature. 9 29 IPR013087 -
Trre8g01062 117 SMART c2h2final6 90 112 IPR013087 -
Trre8g01062 117 SMART c2h2final6 7 29 IPR013087 -
Trre8g01062 117 ProSiteProfiles Zinc finger C2H2 type domain profile. 7 34 IPR013087 -
Trre8g01062 117 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 112 IPR013087 -
Trre8g01062 117 Gene3D Classic Zinc Finger 8 112 - -
Trre8g01062 117 SUPERFAMILY beta-beta-alpha zinc fingers 8 112 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01062 Trre-Chr8 7621509 7621862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01062 43 113 C2H2 Transcription Factor Family AT2G45120 32.609 1.25e-08 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre8g01062 zf-C2H2_6 3.5e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01062 - - mtr:112420782 96.6709