Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01052 ATGGACGCTCTCGATTCCAATCCTCCCTGCGATCTTCCTTCCCAAAACACCACCACATCAGACTACAACAACCAATCCCAAACCCTAATTCCCGAAAACGGCATCAACGGAAACCAATCACAAAACGGCCAAACCACCGTCACCGCCACCGCCACAGATAACAACGATTCACGCCCACATATTCCGAATCAACTTCTCTCCGAGAATGGTTTGACTGGCAACACCCGAAGCGGAACTGATAAGGATCAATCAGGCGGTGAAGAAGAGACAACAAGCAAACGTCGCCGTCGTAGTCGGTGGGATCCACAACCAGATTCAAACGATCAGAACAGTGGCGAAACTGGCGGAACGAAGAAAAGGAAGTCGCGTTGGGCTGATGATGAACCGAAACCGGTAATTCAACTTCCTGATTTCATGGGTGGTATTGAATTTGATCCTGAAATTCAAGCTTTGAATAGTAGATTACTTGAGATTAGTAGAATGTTACAATCTGGTTTACCTTTAGATGATCGTCCTGAAGGTGCTAGATCTCCTTCACCTGAACCTATATATGATAATATGGGCATTAGAATTAATACTCGAGAGTATCGTGCTCGCGAGAGATTGCAAAAAGAAAGACAAGAAATTATATCTCAGATTATTAAGAAAAACCCGGCTTTTAAGCCTCCTGCTGATTATAGACCACCAAAGCTTCAGAAGAAGCTTTATATACCGATGAAAGAATACCCTGGTTATAATTTCATTGGGCTTATTATTGGTCCTAGGGGTAATACTCAGAAACGGATGGAGAAGGAGACTGGTGCTAAGATTGTGATTCGAGGTAAAGGGTCAGTGAAAGAAGGTAGGTTGCAACAGAAGAGGGATTTGAAGCCTGATCCTTCTGAGAATGAAGATTTGCATGTTTTGGTTGAGGCGGATACCGCTGATGCGCTTGAAGCTGCGGCTGGTATGGTTGAGAAGCTCTTGCAGCCTGTGGATGAGGTTTTGAATGAGCATAAGAGGCAACAGCTTAGGGAACTTGCTGCTTTGAATGGGACGATTAGGGATGAGGAGTATTGTAGGTTGTGTGGTGAACCTGGTCATCGCCAATATGCTTGTCCTACAAGGACTTCAACATTTAAGAGTGAAGTTGTTTGTAAGCATTGTGGGGATGGTGGTCATCCTAGCATAGATTGTCCAGTGAAGGGTGCTACAGGGAAGAAGATGGATGATGAGTATCAGAATTTTCTGGCTGAGTTGGGCGGTACAGTTCCTGAATCTGCAATAAAGCATACTAGTACTTTGGCAATTGGGTCGGGCAATTCTGGAAGCAATCCTCCTTGGGCTAACAATTCTAGTCCAGCTGGTAGTACTCCAACACCTGGGTTAGGGGCTGGTGCTGCGAAGAAAGAAATTGATGATACAAATTTGTACATTGGATATCTGCCACCCACTCTTGAGGATGATGGCCTGATCCAATTGTTTCAGCAATTTGGTGAGATCGTTATGGCTAAAGTCATTAAGGATCGAATGACAGGATTGAGTAAAGGATACGGGTTTGTGAAGTATGCTGATATCACCATGGCGAACAATGCAATTGTCGCCATGAATGGTTATCGCCTTGAGGGACGAACCATTGCAGTGAGAGTAGCTGGTAAGCCTCCTCAGCCTGTTGTACCTCCCGGCCCACCAGCGTCGGCTGTGCCCACTTATCCTGTTCAAAGCCAGCCACTTGGTGCCTATCCATCCCAACAATATACCGGCGGTGGTCCCCTTGGGAGTGCTCCTCCCGGGAGTTATGGCGGTACCCCAGTTCCATGGGGACCTCCCATTCCTCCTCAATACAATCCTTATGCTCCTCCTCCGCCTGGGTCAACTATGTATCCCCCTATGCATGGTCAACCTATGCCTCCTTATGGTGTCCAATATCCTCCCATGCCAACTGGTCCCCCTGGTGCCACATCCCAGCCAGCGGCTTCTGGTGAAATGCAGCAGAATTATCCTCCTGGAGTGCAGTCTGATAATAATACATCTACACAGTCAACCAACATGTATGGTAATACAATACCTTCAATGCCACCAGCAGCTCCGCCAACATATCCTGCATCTTATGGATATCCTCCTCCACCTTACTACAATGCAGTTCCTCCACCACCTCCCCCTGCTGCTCCTGCTTCAGACCAATCCCACAGCATTGCTAATGCGCCTTGGGCCAGTAATCATCCTGTACCACCTCCTCCTTCATCTGCAGATCAATCCCAAAGCATTGGAAATGCACCTATGCCTCCTCCTAACTCATCCACGGAGAAGACATCATATGGAGCTGATTCAGAGTATGAGAAATTCATGGCAGAGATGAAATGA 2343 0.4691 MDALDSNPPCDLPSQNTTTSDYNNQSQTLIPENGINGNQSQNGQTTVTATATDNNDSRPHIPNQLLSENGLTGNTRSGTDKDQSGGEEETTSKRRRRSRWDPQPDSNDQNSGETGGTKKRKSRWADDEPKPVIQLPDFMGGIEFDPEIQALNSRLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNMGIRINTREYRARERLQKERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEADTADALEAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVVCKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGTVPESAIKHTSTLAIGSGNSGSNPPWANNSSPAGSTPTPGLGAGAAKKEIDDTNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAIVAMNGYRLEGRTIAVRVAGKPPQPVVPPGPPASAVPTYPVQSQPLGAYPSQQYTGGGPLGSAPPGSYGGTPVPWGPPIPPQYNPYAPPPPGSTMYPPMHGQPMPPYGVQYPPMPTGPPGATSQPAASGEMQQNYPPGVQSDNNTSTQSTNMYGNTIPSMPPAAPPTYPASYGYPPPPYYNAVPPPPPPAAPASDQSHSIANAPWASNHPVPPPPSSADQSQSIGNAPMPPPNSSTEKTSYGADSEYEKFMAEMK 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01052 780 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 468 546 IPR000504 GO:0003723
Trre8g01052 780 ProSiteProfiles Zinc finger CCHC-type profile. 379 393 IPR001878 GO:0003676|GO:0008270
Trre8g01052 780 MobiDBLite consensus disorder prediction 114 130 - -
Trre8g01052 780 MobiDBLite consensus disorder prediction 575 601 - -
Trre8g01052 780 Gene3D - 440 550 IPR012677 -
Trre8g01052 780 SUPERFAMILY RNA-binding domain, RBD 463 556 IPR035979 GO:0003676
Trre8g01052 780 SMART c2hcfinal6 352 368 IPR001878 GO:0003676|GO:0008270
Trre8g01052 780 SMART c2hcfinal6 378 394 IPR001878 GO:0003676|GO:0008270
Trre8g01052 780 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 470 539 IPR000504 GO:0003723
Trre8g01052 780 MobiDBLite consensus disorder prediction 632 780 - -
Trre8g01052 780 MobiDBLite consensus disorder prediction 684 718 - -
Trre8g01052 780 PANTHER RNA-BINDING PROTEIN RELATED 82 590 IPR045071 -
Trre8g01052 780 FunFam splicing factor 1 351 404 - -
Trre8g01052 780 Pfam Splicing factor 1 helix-hairpin domain 120 227 IPR032570 -
Trre8g01052 780 ProSiteProfiles Type-1 KH domain profile. 246 318 - -
Trre8g01052 780 MobiDBLite consensus disorder prediction 428 460 - -
Trre8g01052 780 MobiDBLite consensus disorder prediction 81 103 - -
Trre8g01052 780 MobiDBLite consensus disorder prediction 9 80 - -
Trre8g01052 780 MobiDBLite consensus disorder prediction 743 766 - -
Trre8g01052 780 MobiDBLite consensus disorder prediction 428 452 - -
Trre8g01052 780 MobiDBLite consensus disorder prediction 276 296 - -
Trre8g01052 780 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 231 357 IPR036612 GO:0003723
Trre8g01052 780 Gene3D K Homology domain, type 1 223 351 IPR036612 GO:0003723
Trre8g01052 780 SMART kh_6 231 323 IPR004087 GO:0003676
Trre8g01052 780 Gene3D - 145 222 IPR047086 -
Trre8g01052 780 FunFam splicing factor-like protein 1 223 351 - -
Trre8g01052 780 Gene3D - 352 404 - -
Trre8g01052 780 Pfam KH domain 246 294 IPR004088 GO:0003723
Trre8g01052 780 SMART rrm1_1 469 542 IPR000504 GO:0003723
Trre8g01052 780 MobiDBLite consensus disorder prediction 646 682 - -
Trre8g01052 780 MobiDBLite consensus disorder prediction 1 134 - -
Trre8g01052 780 ProSiteProfiles Zinc finger CCHC-type profile. 353 367 IPR001878 GO:0003676|GO:0008270
Trre8g01052 780 FunFam splicing factor-like protein 1 448 550 - -
Trre8g01052 780 CDD KH-I_BBP 230 323 - -
Trre8g01052 780 MobiDBLite consensus disorder prediction 167 186 - -
Trre8g01052 780 SUPERFAMILY Retrovirus zinc finger-like domains 349 395 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01052 Trre-Chr8 7534183 7536525 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01052 468 673 Eukaryotic Initiation Factors Gene Family AT3G16380 25.822 2.49e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01052 K13095 - gmx:100800982 1122.84