Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01046 ATGGACATGAATTCAAATAATACTCCCGTTCTCACGGATACCGCTCCGATAACAAACTCAAGGCTGCATGTGCATTCCAATTTGTTGCCTTATTCTCATACCGGTGCAAGCTTTCCTCACGGTATGCTATTGAATATCCCAAGGAAGAAGACGGGAATTCTTGAAGATGTTTTTTCTTGTGGTTGGTTGGATGCCATGAAATCATCTTCACCTCCACCGAAGAATAAAACAAAGGATGTTAATCACGGCTATGCATCATCGGAAGCCGATCCTTATTTCAACTGGCTGCTAAAGTATCCATCAGCACTTACATCTTTTGATCAAATTACGAACTACGCAAAAGGCAAAAGAATTGCGTTGTTTTTGGACTATGATGGAACTCTTTCACCAATTGTGGATAATCCTGACTGTGCTTTCATGTCGGATAATATGCGAGCTGCTGTTAAAAAAGTGGCAGAGTATTTTCCAACAGCGATAATTAGCGGAAGAAGTCGTGACAAGGTACATGAATTTGTAGGACTAACCGAACTCTATTATGCTGGTAGCCATGGAATGGACATCATTGGCCCTGTTAGACAATCTCTATCTGTATCACATAACCACCCTAATTGTATCATTAAGTATACTGACAAGCAGGGAAAGAAGGTGAATTTATTCCAACCTGCTGCTGAGTTCTTGCCAATGATTAATGAGGTGCTTAAGTCTCTTATTGAGTGTACAAAAGACATCAAAGGATCAAAAGTTGAGAACAATAAATTTTGTGTATCTGTACATTACCGCAATGTGGACGAGAAGAGTTGGAGTTTGGTGGCGCAACGAGTTAATGATGTTCTTAAGGGCTTTCCACGTTTGCGTTTAACTCATGGTCGCAAGGTTTTAGAGGTTCGACCTGTGATTAACTGGGATAAGGGAAAAGCCGTCACGTTTTTACTCGAGTCACTTGGACTTAACAATTGTGACGATGTTCTTCCTATATATATTGGCGATGATCGGACGGACGAAGATGCATTTAAGGTTCTGAGAGAGGGAAATAAAGGTTATGGAATTTTAGTGTCTTCAGCACCAAAAGAAAGTAATGCAAGTTACTCTCTTCGTGATCCGTCGGAGGTCATGGAATTTCTCAAGTCACTTGTGTTATGGAAGCAAAACCCCTTTAAAAGCCATATATAG 1170 0.4051 MDMNSNNTPVLTDTAPITNSRLHVHSNLLPYSHTGASFPHGMLLNIPRKKTGILEDVFSCGWLDAMKSSSPPPKNKTKDVNHGYASSEADPYFNWLLKYPSALTSFDQITNYAKGKRIALFLDYDGTLSPIVDNPDCAFMSDNMRAAVKKVAEYFPTAIISGRSRDKVHEFVGLTELYYAGSHGMDIIGPVRQSLSVSHNHPNCIIKYTDKQGKKVNLFQPAAEFLPMINEVLKSLIECTKDIKGSKVENNKFCVSVHYRNVDEKSWSLVAQRVNDVLKGFPRLRLTHGRKVLEVRPVINWDKGKAVTFLLESLGLNNCDDVLPIYIGDDRTDEDAFKVLREGNKGYGILVSSAPKESNASYSLRDPSEVMEFLKSLVLWKQNPFKSHI 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01046 389 CDD HAD_TPP 119 372 - -
Trre8g01046 389 SUPERFAMILY HAD-like 119 381 IPR036412 -
Trre8g01046 389 FunFam Trehalose 6-phosphate phosphatase 222 298 - -
Trre8g01046 389 NCBIfam trehalose-phosphatase 217 378 IPR003337 GO:0003824|GO:0005992
Trre8g01046 389 FunFam Trehalose 6-phosphate phosphatase 228 387 - -
Trre8g01046 389 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 29 383 IPR044651 GO:0004805|GO:0005992
Trre8g01046 389 Pfam Trehalose-phosphatase 121 368 IPR003337 GO:0003824|GO:0005992
Trre8g01046 389 NCBIfam HAD-IIB family hydrolase 120 341 IPR006379 -
Trre8g01046 389 Gene3D - 223 388 IPR023214 -
Trre8g01046 389 Gene3D - 118 206 IPR023214 -
Trre8g01046 389 FunFam Trehalose 6-phosphate phosphatase 118 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01046 Trre-Chr8 7488357 7491049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01046 112 377 Trehalose Biosynthesis Gene Families AT1G70290 26.148 2.36e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01046 K01087 - gmx:100819495 662.144