Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01045 ATGGCTCGCGGAAAGGTTCAGCTGAAGCGAATTGAGAACCCAGTCCATAGACAAGTTACTTTTTGTAAGCGCCGAGCAGGGCTTCTGAAGAAGGCTAAGGAGCTCTCTGTGCTTTGCGATGCTGAAATTGGCCTTGTCATTTTCTCCGCTCATGGAAAGCTCTATGAACTCGCCACCAAAGGAAGCATGCAAGGGCTTATAGAGAAGTACTTAAAGTTCACACGTGGGACTCAACCTGAAGCTATCACTGAACCACGTCCTCTTGTAATGGATGCTAAAGAGGAAGCCAATGTGATAAAACAAGAGATTGAAACATTGCAAAAGGGCATCAGGTATTTGTTTGGAGGAGGATTAGGCACAATAGCATTGGATGAATTGCAAGTTCTAGAGAAGAATCTTGAAATCTGGATGTATCATGTTCGCTCAATGAAGATGAACATTATGTCGGAAGAAATTCAAGCTTTGAGAGATAAGGAGGGAACACTAAAGGCGGCAAATAAATATCTCCATGATTTGGTGTTGGAGAATACTTCCGTCACTAACTTTGTTCCATTAGTTGATACCTCGTACCCACTAATTATACAAGATGGGATTTTTCAGCTCTAG 606 0.4241 MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLVIFSAHGKLYELATKGSMQGLIEKYLKFTRGTQPEAITEPRPLVMDAKEEANVIKQEIETLQKGIRYLFGGGLGTIALDELQVLEKNLEIWMYHVRSMKMNIMSEEIQALRDKEGTLKAANKYLHDLVLENTSVTNFVPLVDTSYPLIIQDGIFQL 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01045 201 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Trre8g01045 201 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre8g01045 201 Coils Coil 89 109 - -
Trre8g01045 201 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre8g01045 201 Pfam K-box region 92 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre8g01045 201 SUPERFAMILY SRF-like 1 75 IPR036879 GO:0003677|GO:0046983
Trre8g01045 201 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre8g01045 201 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre8g01045 201 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre8g01045 201 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Trre8g01045 201 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Trre8g01045 201 Gene3D - 15 77 IPR036879 GO:0003677|GO:0046983
Trre8g01045 201 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trre8g01045 201 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01045 Trre-Chr8 7476110 7481861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01045 1 201 MADS-box Gene Family AT1G71692 59.716 2.12e-76 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Trre8g01045 K-box 2.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01045 - - mtr:25491856 327.405