Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01044 ATGAATACATTTTCTCATGTTCCCCCTGGTTTTAGGTTCCATCCTACAGATGAGGAACTTGTTGATTATTACCTTAGGAAGAAAATTGCTTCAAGAAGGATTGACCTTGATGTCATAAAAGATGTTGACCTTTACAAAATTGAACCATGGGATCTTCAAGAGCTTTGCAGAATAGGAACAGAAGAACAAAATGAATGGTATTTTTTTAGCCATAAAGATAAGAAATATCCAACTGGTACAAGAACAAATAGAGCAACCGCAGCTGGATTTTGGAAAGCAACAGGAAGAGACAAAGCAATATATAGTAAGCATGATCTTATAGGAATGAGAAAAACCTTAGTGTTTTATAAAGGTAGAGCTCCAAATGGACAAAAATCAGATTGGATTATGCATGAGTATCGCCTTGAAACAGATGAAAATGGCACACCACAGGAAGAAGGATGGGTTGTATGTAGAGTCTTCAAAAAGAGAGTAACAACAACTATGCGAAAAATGAATGAGCATGACTCTCCTTGTTGGTATGATGATCAAGTTTCTTTCATGCAAGACATAGACTCACCAAATCAAACCTCTCAATCAAATTTGATTTACCAACAACTTCCTTATCCTTGCAAAAAAGAGCTAGATAATTTACCATACCAAAACTTGCCTCGTGACCATTTTCTTAATCTACCACTTTTAGAGAGTCCAAAACTTCTTCAATCATCTTCAAACATAACCTCTAATCCAATGGTCACAACAACATATGGTACTATAGATCATGCAAATTCTATGCTTCCTTCATCATCAATGCTACTACAAGAAGAACATATCATAAACCCTAATCAACAAAACTTTCATGCTATGTATGGAAACGATAATTCAAATATTGAACAAGGTGTTGTTGATGAACAAGTTACTACTGATTGGAGAGTTCTTGACAAGTTTGTTGCTTCACAACTTAGTCAAGATGCATCTAAAGATAATAACACAAGCAATATCTTTCATGGCAATGCTCAATTGAGAAATTTGGAGAAACAAGAAATGGTGCCTCATGAAAATGCCTCAACATCAAACTCAAGTTGTCCAATTGATTTGTGGAAATAG 1086 0.3508 MNTFSHVPPGFRFHPTDEELVDYYLRKKIASRRIDLDVIKDVDLYKIEPWDLQELCRIGTEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSKHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETDENGTPQEEGWVVCRVFKKRVTTTMRKMNEHDSPCWYDDQVSFMQDIDSPNQTSQSNLIYQQLPYPCKKELDNLPYQNLPRDHFLNLPLLESPKLLQSSSNITSNPMVTTTYGTIDHANSMLPSSSMLLQEEHIINPNQQNFHAMYGNDNSNIEQGVVDEQVTTDWRVLDKFVASQLSQDASKDNNTSNIFHGNAQLRNLEKQEMVPHENASTSNSSCPIDLWK 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01044 361 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
Trre8g01044 361 MobiDBLite consensus disorder prediction 342 361 - -
Trre8g01044 361 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 270 - -
Trre8g01044 361 FunFam NAC domain-containing protein 16 160 - -
Trre8g01044 361 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Trre8g01044 361 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Trre8g01044 361 Gene3D NAC domain 16 160 IPR036093 GO:0003677|GO:0006355
Trre8g01044 361 MobiDBLite consensus disorder prediction 343 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01044 Trre-Chr8 7468784 7471822 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01044 1 359 NAC Transcription Factor Family AT1G62700 54.106 1.84e-132 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre8g01044 NAM 5.1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01044 - - gmx:100815845 558.91