Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01043 ATGACGGAGATCATAAGCAATGGTTTATTCGTCAATTGGGAATTCGTTAAACGTGACGGTCTTGTTCACTACACGAATGATGTTACCGAAGAGGCATTTCCGAGATGGTTTTCGGTTCGAGAGAGGAAACTATTGGAATCTTCTAGAGTTATTAAAGCTCATCTTATTGTTGCGAAAGATGGTTCGGGGGATTTTAAGAAAGTTCAAGATGCTATAAATGCGGCCGGAAGGAGAAAATTTAAGACAAGATTTGTTATTCGTGTGAAGAGAGGTATTTATAGAGAGAATATTGTAGTTGGAAAGATGAATGATAATATTATGTTGGTTGGTGATGGGAGTAGGAATACGATTATTACAAGTAATAGAAATGTTCAAGCTGGTTTTACTACCTATAGTTCTGCCACTGCAGGAATCGATGGTCTTCACTTCATTGCACGTGACATAACTTTTGAAAATACGGCGGGACCTCGTCGAGGTCAAGCAGTGGCACTTCGATCGGCCTCTGATCTTTCGGTTTTCTACCATTGTGCTTTCAAAGGCTATCAAGACACCCTCATGGTGCATGCACAACGTCAATTTTATAGAGAATGTTATATCTATGGTACCGTTGACTTCATCTTTGGCAATGCAGCAGTAGTTTTTCAAAATTGCATAATTCTTGTAAGAAGACCATTAAACGGTCAAGCAAATATGATCACGGCCCAAGGTCGAGATGACCCGTTTCAAAACACTGGAATATCAATTCATAATTCTCAGATTAGGGCTGCTCCCGACTTCAGGCCCGTTGTTGCGAAATTCAATACTTTTATGGGCCGGCCTTGGCAAAGATATTCTAGAGTTGTGGTCATGAAATCATTCATAGATAATTTGGTGAGCCCAATGGGTTGGTCTCCATGGGGAGGTACTAACTTTGCACAAAGTACACTGTTTTATGGAGAGTATAAGAACTTTGGGCCGGGCTCATCAACAAGAAATAGAGTAAGATGGCCCGGCTATCATGTTTTGAATAGCCCAGCCCAAGCAACGCAATTTACTGTTGCTAACCTCCTTGCTGGTGCCACGTGGTTACCATCCACTGGTGTACCATTCACTTCTGGACTTTAA 1104 0.4139 MTEIISNGLFVNWEFVKRDGLVHYTNDVTEEAFPRWFSVRERKLLESSRVIKAHLIVAKDGSGDFKKVQDAINAAGRRKFKTRFVIRVKRGIYRENIVVGKMNDNIMLVGDGSRNTIITSNRNVQAGFTTYSSATAGIDGLHFIARDITFENTAGPRRGQAVALRSASDLSVFYHCAFKGYQDTLMVHAQRQFYRECYIYGTVDFIFGNAAVVFQNCIILVRRPLNGQANMITAQGRDDPFQNTGISIHNSQIRAAPDFRPVVAKFNTFMGRPWQRYSRVVVMKSFIDNLVSPMGWSPWGGTNFAQSTLFYGEYKNFGPGSSTRNRVRWPGYHVLNSPAQATQFTVANLLAGATWLPSTGVPFTSGL 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01043 367 Gene3D - 48 367 IPR012334 -
Trre8g01043 367 Pfam Pectinesterase 55 352 IPR000070 GO:0030599|GO:0042545
Trre8g01043 367 SUPERFAMILY Pectin lyase-like 50 366 IPR011050 -
Trre8g01043 367 PANTHER PECTINESTERASE 15 357 - -
Trre8g01043 367 FunFam Pectinesterase 48 367 - -
Trre8g01043 367 ProSitePatterns Pectinesterase signature 2. 199 208 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01043 Trre-Chr8 7451435 7452999 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01043 1 367 Carbohydrate Esterase AT3G47400 63.514 1.22e-170 487
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01043 K01051 - gmx:100807908 617.846