Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01042 ATGAAAGTAAACATGACGGAGATCATAAGCAATGGTTTATTCGTCAATTGGGAATTCGTTAAACGTGACGGTCTTGTTCACTACACGAATGATGTTACCGAAGAGGCATTTCCGAGATGGTTTTCGGTTCGAGAGAGGAAACTATTGGAATCTTCTAGAGTTATTAAAGCTCATCTTATTGTTGCGAAAGATGGTTCGGGGGATTTTAAGAAAGTTCAAGATGCTATAAATGCGGCCGGAAGGAGAAAATTTAAGACAAGATTTGTTATTCGTGTGAAGAGAGGTATTTATAGAGAGAATATTGTAGTTGGAAAGATGAATGATAATATTATGTTGGTTGGTGATGGGAGTAGGAATACGATTATTACAAGTAATAGAAATGTTCAAGCTGGTTTTACTACCTATAGTTCTGCCACTGCAGGAATCGATGGTCTTCACTTCATTGCACGTGACATAACTTTTGAAAATACGGCGGGACCTCGTCGAGGTCAAGCAGTGGCACTTCGATCGGCCTCTGATCTTTCGGTTTTCTACCATTGTGCTTTCAAAGGCTATCAAGACACCCTCATGGTGCATGCACAACGTCAATTTTATAGAGAATGTTATATCTATGGTACCGTTGACTTCATCTTTGGCAATGCAGCAGTAGTTTTTCAAAATTGCATAATTCTTGTAAGAAGACCATTAAACGGTCAAGCAAATATGATCACGGCCCAAGGTCGAGATGACCCGTTTCAAAACACTGGAATATCAATTCATAATTCTCAGATTAGGGCTGCTCCCGACTTCAGGCCCGTTGTTGCGAAATTCAATACTTTTATGGGCCGGCCTTGGCAAAGATATTCTAGAGTTGTGGTCATGAAATCATTCATAGATAATTTGGTGAGCCCAATGGGTTGGTCTCCATGGGGAGGTACTAACTTTGCACAAAGTACACTGTTTTATGGAGAGTATAAGAACTTTGGGCCGGGCTCATCAACAAGAAATAGAGTAAGATGGCCCGGCTATCATGTTTTGAATAGCCCAGCCCAAGCAACGCAATTTACTGTTGCTAACCTCCTTGCTGGTGCCACGTGGTTACCATCCACTGGTGTACCATTCACTTCTGGACTTTAA 1116 0.4122 MKVNMTEIISNGLFVNWEFVKRDGLVHYTNDVTEEAFPRWFSVRERKLLESSRVIKAHLIVAKDGSGDFKKVQDAINAAGRRKFKTRFVIRVKRGIYRENIVVGKMNDNIMLVGDGSRNTIITSNRNVQAGFTTYSSATAGIDGLHFIARDITFENTAGPRRGQAVALRSASDLSVFYHCAFKGYQDTLMVHAQRQFYRECYIYGTVDFIFGNAAVVFQNCIILVRRPLNGQANMITAQGRDDPFQNTGISIHNSQIRAAPDFRPVVAKFNTFMGRPWQRYSRVVVMKSFIDNLVSPMGWSPWGGTNFAQSTLFYGEYKNFGPGSSTRNRVRWPGYHVLNSPAQATQFTVANLLAGATWLPSTGVPFTSGL 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01042 371 FunFam Pectinesterase 52 371 - -
Trre8g01042 371 ProSitePatterns Pectinesterase signature 2. 203 212 IPR033131 -
Trre8g01042 371 Gene3D - 52 371 IPR012334 -
Trre8g01042 371 SUPERFAMILY Pectin lyase-like 54 370 IPR011050 -
Trre8g01042 371 Pfam Pectinesterase 59 356 IPR000070 GO:0030599|GO:0042545
Trre8g01042 371 PANTHER PECTINESTERASE 4 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01042 Trre-Chr8 7451435 7453011 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01042 4 371 Carbohydrate Esterase AT3G47400 63.612 2.23e-171 489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01042 K01051 - gmx:100807908 620.542