Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01041 ATGACAATCATCATAGGAAAGATATTGCTAACACTATTATTGTTATCATCAATTTTCTCAATAGCCACTTCATCTAAAAGAAGATCAAGATCTTCAAACAACAACATAGATTATTGGTGTAACCAAACCCCTCACCCAGAACCATGCAAACACTACATAAAACAAACCCAATACTATCACAAAAAAATCAAACACAAATCAAAATTCCGCGAAATTCTCATCCATTTAGCATTGGAAAGAGCCGTTATAATGCGAAACATCGCACGTGAGTTTGGACAAAACAGTTGGCTCACCAACAAGAGGAAAAAATCCGTGTCACGTGATTGTTTAAAACTCTACGACAACACAGTTTTCCATCTCAACCGTACATTTTTAGACTTGCACATCAAAAAAAGATGTTCATCATTCGACGCACAAACATGGCTAAGCACTGCTTACACGAACATCCAAACATGTCAAAATGGAGCATTAGAATTAAACATTCCAAAATTCATCGTGCCAATTATGAAAGTAAACATGACGGAGATCATAAGCAATGGTTTATTCGTCAATTGGGAATTCGTTAAACGTGACGGTCTTGTTCACTACACGAATGATGTTACCGAAGAGGCATTTCCGAGATGGTTTTCGGTTCGAGAGAGGAAACTATTGGAATCTTCTAGAGTTATTAAAGCTCATCTTATTGTTGCGAAAGATGGTTCGGGGGATTTTAAGAAAGTTCAAGATGCTATAAATGCGGCCGGAAGGAGAAAATTTAAGACAAGATTTGTTATTCGTGTGAAGAGAGGTATTTATAGAGAGAATATTGTAGTTGGAAAGATGAATGATAATATTATGTTGGTTGGTGATGGGAGTAGGAATACGATTATTACAAGTAATAGAAATGTTCAAGCTGGTTTTACTACCTATAGTTCTGCCACTGCAGGAATCGATGGTCTTCACTTCATTGCACGTGACATAACTTTTGAAAATACGGCGGGACCTCGTCGAGGTCAAGCAGTGGCACTTCGATCGGCCTCTGATCTTTCGGTTTTCTACCATTGTGCTTTCAAAGGCTATCAAGACACCCTCATGGTGCATGCACAACGTCAATTTTATAGAGAATGTTATATCTATGGTACCGTTGACTTCATCTTTGGCAATGCAGCAGTAGTTTTTCAAAATTGCATAATTCTTGTAAGAAGACCATTAAACGGTCAAGCAAATATGATCACGGCCCAAGGTCGAGATGACCCGTTTCAAAACACTGGAATATCAATTCATAATTCTCAGATTAGGGCTGCTCCCGACTTCAGGCCCGTTGTTGCGAAATTCAATACTTTTATGGGCCGGCCTTGGCAAAGATATTCTAGAGTTGTGGTCATGAAATCATTCATAGATAATTTGGTGAGCCCAATGGGTTGGTCTCCATGGGGAGGTACTAACTTTGCACAAAGTACACTGTTTTATGGAGAGTATAAGAACTTTGGGCCGGGCTCATCAACAAGAAATAGAGTAAGATGGCCCGGCTATCATGTTTTGAATAGCCCAGCCCAAGCAACGCAATTTACTGTTGCTAACCTCCTTGCTGGTGCCACGTGGTTACCATCCACTGGTGTACCATTCACTTCTGGACTTTAA 1620 0.3957 MTIIIGKILLTLLLLSSIFSIATSSKRRSRSSNNNIDYWCNQTPHPEPCKHYIKQTQYYHKKIKHKSKFREILIHLALERAVIMRNIAREFGQNSWLTNKRKKSVSRDCLKLYDNTVFHLNRTFLDLHIKKRCSSFDAQTWLSTAYTNIQTCQNGALELNIPKFIVPIMKVNMTEIISNGLFVNWEFVKRDGLVHYTNDVTEEAFPRWFSVRERKLLESSRVIKAHLIVAKDGSGDFKKVQDAINAAGRRKFKTRFVIRVKRGIYRENIVVGKMNDNIMLVGDGSRNTIITSNRNVQAGFTTYSSATAGIDGLHFIARDITFENTAGPRRGQAVALRSASDLSVFYHCAFKGYQDTLMVHAQRQFYRECYIYGTVDFIFGNAAVVFQNCIILVRRPLNGQANMITAQGRDDPFQNTGISIHNSQIRAAPDFRPVVAKFNTFMGRPWQRYSRVVVMKSFIDNLVSPMGWSPWGGTNFAQSTLFYGEYKNFGPGSSTRNRVRWPGYHVLNSPAQATQFTVANLLAGATWLPSTGVPFTSGL 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01041 539 Gene3D - 220 539 IPR012334 -
Trre8g01041 539 Gene3D Invertase/pectin methylesterase inhibitor family protein 30 185 IPR035513 -
Trre8g01041 539 SUPERFAMILY Pectin lyase-like 222 538 IPR011050 -
Trre8g01041 539 FunFam Pectinesterase 220 539 - -
Trre8g01041 539 SMART PMEI_2 31 183 IPR006501 GO:0004857
Trre8g01041 539 CDD PMEI-like_3 39 184 - -
Trre8g01041 539 ProSitePatterns Pectinesterase signature 2. 371 380 IPR033131 -
Trre8g01041 539 Pfam Pectinesterase 227 524 IPR000070 GO:0030599|GO:0042545
Trre8g01041 539 Pfam Plant invertase/pectin methylesterase inhibitor 35 179 IPR006501 GO:0004857
Trre8g01041 539 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 34 183 IPR035513 -
Trre8g01041 539 PANTHER PECTINESTERASE 15 529 - -
Trre8g01041 539 NCBIfam pectinesterase inhibitor domain 9 179 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01041 Trre-Chr8 7451435 7453515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01041 21 539 Carbohydrate Esterase AT3G47400 55.283 0.0 599