Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01032 ATGCTTTTAACGGGTGCGTCCCTAAATGTGACTCTTGCAGCAGCGAAATCAACTGCGGCTTTGATATCAACGCTCGCTAAAAGCCATGGGTTGAAGCCAAGAGAGGTTGCGGCTATGAAGGATTGCGTCGAAGTGCTAAGTGATTCTTTGGATGAACTCCGAAGGTCTATCAATGAGATGAGTCATCTTAGAGCTTCAAATTTTGAGCTAAAAATAAGCAATGTACAAACTTGGGTTAGTGCTGCTTTGACGGATCAGACCACTTGTACCGATGGATTCGAAGAGATCAATTCCACGGGAAATATTAAGACAATAGTGAGAAGGATAATTGTACAAGTAGCTCAAATGACTAGCAATGCTTTGGCTTTCATAAATAAACTTGCCAATTCTAAATAA 396 0.4091 MLLTGASLNVTLAAAKSTAALISTLAKSHGLKPREVAAMKDCVEVLSDSLDELRRSINEMSHLRASNFELKISNVQTWVSAALTDQTTCTDGFEEINSTGNIKTIVRRIIVQVAQMTSNALAFINKLANSK 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01032 131 PANTHER PECTINESTERASE INHIBITOR-LIKE 5 123 - -
Trre8g01032 131 SMART PMEI_2 2 123 IPR006501 GO:0004857
Trre8g01032 131 NCBIfam pectinesterase inhibitor domain 5 127 IPR006501 GO:0004857
Trre8g01032 131 CDD PMEI-like_3 3 129 - -
Trre8g01032 131 Pfam Plant invertase/pectin methylesterase inhibitor 3 122 IPR006501 GO:0004857
Trre8g01032 131 Gene3D Invertase/pectin methylesterase inhibitor family protein 2 129 IPR035513 -
Trre8g01032 131 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 3 127 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01032 Trre-Chr8 7390880 7391275 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01032 6 127 Carbohydrate Esterase AT1G53830 34.677 4.05e-18 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01032 - - gmx:100802601 190.274