Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01028 ATGTCGTCGGAAAACGATCCACCTCCACCGACGCCGTCGCCGGTATCAGCCAAATCAAGCAAACTTCAGAAATTCCCTCACATTCTAAATCGACATACCGCATCATCATCATCTTCATCATCCAACAATGAAATCATCGTCGACGAAGGCGAAGAAGAGAAGAATAAGAACAAGAATAAGGTTCAAGAAGAAGAAGACGCCGTTGTTTTTGTACCTCGAGGTCAATTAGAACGAGCTGAATCTTCTTATTCTTCTTCCATTTTACTACAAGCTTCTTCGTTAGGTCTAAATCAAATTCGAACGCGATTCTCTTCGCCTCTTCGTCATTCTTCTTCTGCCGGTGCTCCTACTTTCGCTGCTGTTCCTGTCAATATCAACAATGTCGCTAAATCTAGATCCAAATCTTCATATCCAAAAGACCTAGGGGAAAAAGTTCATTGGAATTCGAAATCGTTGAAAGCTCATTCACAACGCCTCCCTGTGTTGGAGGGTAACAATGCAGCTTTGGCCAAAGAAATACAATCCCCACGTTTTCAGGAAATCCTTCGACTTACAAGTCAAAATAAAAGAAACCGTGATATTAAAAGCTTTTCCCATGAACTCAACTCCAGAGGAGTTAGGCCTTATCCAATCTGGAAACATCGTGATCGTGGGCATGTGGAGGAAGTCATGGTGGCGATTAGAGCTAAGTTTGAAAAACTAAAGGAAGAAGTTGATGTTGATTTGGGTGTTTTTGCTGGTGATTTGGTGGGTACTCTTGAAAAAATATCTGGGTCACATTGTGAATGGAAAGAGGGGTTGGAAGATTTGTTGGTTGTTGCCCGACAATGTGCAAAGATGCCAGCTGCTGAGTTTTGGATCAAATGTGAAACTATTGTTCAAAAATTAGACGACAAGCGTCAAGAAATACCAGTTGGGATCCTCAAACAAGCTCATACACACCTGCTGTTTATTCTCTCCAGGTGCACTCGTCTTGTGCAATTCCAGAAGGAAAGTGGTTCTGAACAAGAGCACGTTCTTGCTCAGCACCAACTCAGCGATCTTGGAGCATATCCAGCGTTAATTGCAAAGGCTGCAGAGAATTGCAGTATTCCAACTAGTGCACTTGAGATAGCGGAGCAGTTAAAAAAGTCACATGGAAAAGAGCAAGAAGAATTTATAACAAAACAAAGTCAACCTGACCAAGATGCAAGTGTTGTTATTGACAATGTAGAGGTTAATACAGCTAAAAGTACTGAGTCAACTCCTGGAAGTTATAAGATGTCTTCTTGGAGAAGGTTTCCATCTGCTGCGGAGAAAAACCGCGTAGGTCAAGAACTGGTGAAAGATGAAAATGCTGAACACTTAGAGACTTCATCGTGTCATCATGAACATTCTCAGACGTCATCTAGAACGCGGAAATTTTCTTGGGGATACTGGGGAGATCAGCAAAATCTACCATATGATTATTCAAATTCAAATATGATCTGCAGGATTTGTGAGGTTGAAATACCAATCATAAGTGTGGAGGAGCATTCTCGAATATGCACAATTGCTGATAAATGTGATTTGAAAGGCTTAACTGTAAATGAACGGCTTGAAAGAGTTTCTGAAACTATTGAAAGGTTACTTGAATCCTGGACACCAAAAAGCACACCTAAAAGCACTGATACTCATGGGGAAAGCTTCGAGGTTGCAAGAGTGTCAACATCAAGTTTGCACGAAGAGTTCAATGAGTTATCTCTAGAAAGAAATAACTTGTCTAATAGATGCTCTGAAGGCATGCTTGACCCTGCTCATGAACCTGATAATAGTTTTGTTGCGGATGATCTAAACCTTTCACCCGAAATATCATGTGATACTCATATCTGCGTCAAACCTGATCATAGTGCAAATGTATCTTCACCTGGAAGCTTGACACCGCGATCACCGTTGGTTACACCAAGAACAAGTCAGATAGAAATTTTACTAAGTGGAAGAAGACCAATATCTGAACTTGAGAGTTATGATCAGATAAACAAGCTAGTTGAAATTGCTCGTGCTGTCGCAAATGTGAACAACTGTGACTACAGTGCTTTGGAGTATTTGCTTGATCGCGTGGAAGACCTGAAATACGTAATTCAGGACAGAAAAGAGGATGCACTTATTGTGGAGACTTTTGGTCGACGAATAGAGAAACTTTTGCTGGAGAAATATGCTACCCTTTGTGGGCAAATAGAAGATGAAAGGGTAGAATCATCAAATAGCATGGCTGATGAAGAGAGTTCAGTGGAAGAGGATACAGTCCGTAGCCTTCGTGCTAGCCCAATGAATTGTGGTTCTAAGGACAGAACATCTATTGAAGATTTTGAAATAATAAAACCAATAAGCAGGGGTGCATTTGGACGAGTTTTTCTTGCCAGGAAAAGAGCGACTGGTGATTTATTTGCTATTAAGGTTCTGAAAAAGGCGGATATGATTCGTAAAAATCAAGTTGAGGGTATTTTGGTTGAGCGAGACATCCTTATATCTATTCGAAACCCTTTTGTGGTACGATTTTTCTATTCGTTCACATGTAGAGAAAATCTTTATTTGGTTATGGAGTATTTGAATGGCGGAGATCTCTATTCTATGTTGAGAAACCTGGGTTGCTTAGATGAAGATATGGCTCGTGTATATATTGCGGAACTTGTTCTTGCGTTGGAGTATTTGCATGCCAACAGTATAATTCACAGAGACTTGAAGCCAGATAACTTATTGATTGGTCAAGATGGTCACATTAAATTGACAGACTTTGGACTCTCAAAAGTTGGTCTCATCAATAGCACGGATGATTTATCAGCACCCTCATCTTTCACTAACGGTTTTTTAGGCGATGATGAACCAAAAACTCAACATGTTTCAAAAAGGGAAGCACGTCAACAACAAGGAGTAGTTGGCACTCCAGATTATTTGGCACCCGAAATACTTCTGGGCATGGGACATGGTGCAACTGCAGATTGGTGGTCGGTGGGTGTCATACTTTATGAGCTTCTTGTGGGTATTCCACCTTTTAATGCAGAACATCCACAGCAAATTTTTGATAACATAATTAACAGAGACATACAATGGCCAAATTATCCTGAGGAGATCAGCTATGAAGCGTACGACTTGATGAATAAATTAATGAACGAAAACCCAGTACAAAGATTAGGTGCAACAGGAGCTACGGAAGTTAAACGCCATGCTTTCTTCAAGGATATTAACTGGGATACGCTGGCAATGCAGAAGGCTATGTTCATACCATCGGCTGAATCTCATGATACAAGTTATTTTATGAGCCGCTACATTTGGAATCCAGAGGAAGAACATTGTGCTGGAGCTAGTGATTTTGATGACATTACTGAAACATACAGCAGTGGTTCAGGAAGCGGCGGTGATTCACTAGATGAAGATGGTGATGAATGCCCGAGTTTAAAAGAGTTCCCTCCTCCAAATCAAAATCTTGAGGTGCAGTACTCGTTTAGTAACTTCTCATTTAAGAATTTATCTCAGCTAGTGACTATAAATTATGATATGATGCTTAAGAACTCCAAGGATTCACCCAATGACTCCAACCCATCTGCTCCATGA 3570 0.4064 MSSENDPPPPTPSPVSAKSSKLQKFPHILNRHTASSSSSSSNNEIIVDEGEEEKNKNKNKVQEEEDAVVFVPRGQLERAESSYSSSILLQASSLGLNQIRTRFSSPLRHSSSAGAPTFAAVPVNINNVAKSRSKSSYPKDLGEKVHWNSKSLKAHSQRLPVLEGNNAALAKEIQSPRFQEILRLTSQNKRNRDIKSFSHELNSRGVRPYPIWKHRDRGHVEEVMVAIRAKFEKLKEEVDVDLGVFAGDLVGTLEKISGSHCEWKEGLEDLLVVARQCAKMPAAEFWIKCETIVQKLDDKRQEIPVGILKQAHTHLLFILSRCTRLVQFQKESGSEQEHVLAQHQLSDLGAYPALIAKAAENCSIPTSALEIAEQLKKSHGKEQEEFITKQSQPDQDASVVIDNVEVNTAKSTESTPGSYKMSSWRRFPSAAEKNRVGQELVKDENAEHLETSSCHHEHSQTSSRTRKFSWGYWGDQQNLPYDYSNSNMICRICEVEIPIISVEEHSRICTIADKCDLKGLTVNERLERVSETIERLLESWTPKSTPKSTDTHGESFEVARVSTSSLHEEFNELSLERNNLSNRCSEGMLDPAHEPDNSFVADDLNLSPEISCDTHICVKPDHSANVSSPGSLTPRSPLVTPRTSQIEILLSGRRPISELESYDQINKLVEIARAVANVNNCDYSALEYLLDRVEDLKYVIQDRKEDALIVETFGRRIEKLLLEKYATLCGQIEDERVESSNSMADEESSVEEDTVRSLRASPMNCGSKDRTSIEDFEIIKPISRGAFGRVFLARKRATGDLFAIKVLKKADMIRKNQVEGILVERDILISIRNPFVVRFFYSFTCRENLYLVMEYLNGGDLYSMLRNLGCLDEDMARVYIAELVLALEYLHANSIIHRDLKPDNLLIGQDGHIKLTDFGLSKVGLINSTDDLSAPSSFTNGFLGDDEPKTQHVSKREARQQQGVVGTPDYLAPEILLGMGHGATADWWSVGVILYELLVGIPPFNAEHPQQIFDNIINRDIQWPNYPEEISYEAYDLMNKLMNENPVQRLGATGATEVKRHAFFKDINWDTLAMQKAMFIPSAESHDTSYFMSRYIWNPEEEHCAGASDFDDITETYSSGSGSGGDSLDEDGDECPSLKEFPPPNQNLEVQYSFSNFSFKNLSQLVTINYDMMLKNSKDSPNDSNPSAP 1189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01028 1189 SUPERFAMILY Protein kinase-like (PK-like) 773 1099 IPR011009 -
Trre8g01028 1189 MobiDBLite consensus disorder prediction 1 15 - -
Trre8g01028 1189 SMART serkin_6 776 1064 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g01028 1189 MobiDBLite consensus disorder prediction 47 63 - -
Trre8g01028 1189 MobiDBLite consensus disorder prediction 1 63 - -
Trre8g01028 1189 ProSitePatterns Serine/Threonine protein kinases active-site signature. 895 907 IPR008271 GO:0004672|GO:0006468
Trre8g01028 1189 Pfam Protein kinase domain 776 1064 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g01028 1189 MobiDBLite consensus disorder prediction 1111 1143 - -
Trre8g01028 1189 Gene3D Phosphorylase Kinase; domain 1 774 1091 - -
Trre8g01028 1189 FunFam probable serine/threonine protein kinase IREH1 774 864 - -
Trre8g01028 1189 MobiDBLite consensus disorder prediction 29 45 - -
Trre8g01028 1189 FunFam Serine threonine protein kinase 958 1082 - -
Trre8g01028 1189 ProSiteProfiles Protein kinase domain profile. 776 1064 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g01028 1189 Coils Coil 47 67 - -
Trre8g01028 1189 Gene3D Transferase(Phosphotransferase) domain 1 860 1082 - -
Trre8g01028 1189 CDD STKc_MAST_like 782 1069 - -
Trre8g01028 1189 PANTHER SERINE/THREONINE-PROTEIN KINASE 460 1127 - -
Trre8g01028 1189 FunFam AGC protein kinase 856 927 - -
Trre8g01028 1189 ProSiteProfiles AGC-kinase C-terminal domain profile. 1065 1169 IPR000961 GO:0004674|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01028 Trre-Chr8 7353012 7362278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01028 22 1189 AGC Kinase Gene Family AT5G62310 60.132 0.0 1371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_MAST Trre8g01028 Pkinase 3e-63 CL0016